Yingying Zhang

Summary

Affiliation: Jacobs University Bremen
Country: Germany

Publications

  1. ncbi Non-imprinted allele-specific DNA methylation on human autosomes
    Yingying Zhang
    School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, D 28759 Bremen, Germany
    Genome Biol 10:R138. 2009
  2. ncbi DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones
    Yingying Zhang
    School of Engineering and Science, Jacobs University Bremen, Bremen, Germany
    Methods Mol Biol 507:177-87. 2009
  3. ncbi BISMA--fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences
    Christian Rohde
    School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, 28725 Bremen, Germany
    BMC Bioinformatics 11:230. 2010
  4. ncbi New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses
    Christian Rohde
    School of Engineering and Science, Jacobs University Bremen, Bremen, Germany
    Biotechniques 47:781-3. 2009
  5. ncbi DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution
    Yingying Zhang
    School of Engineering and Science, Jacobs University Bremen, Bremen, Germany
    PLoS Genet 5:e1000438. 2009
  6. ncbi Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis
    Christian Rohde
    School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, 28725 Bremen, Germany
    Nucleic Acids Res 36:e34. 2008
  7. ncbi DNA methyltransferase assays
    Renata Z Jurkowska
    Biochemistry Lab, School of Engineering and Science, Jacobs University Bremen, Bremen, Germany
    Methods Mol Biol 791:157-77. 2011
  8. ncbi Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail
    Yingying Zhang
    Biochemistry Laboratory, School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, 28759 Bremen, Germany
    Nucleic Acids Res 38:4246-53. 2010

Collaborators

Detail Information

Publications8

  1. ncbi Non-imprinted allele-specific DNA methylation on human autosomes
    Yingying Zhang
    School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, D 28759 Bremen, Germany
    Genome Biol 10:R138. 2009
    ..Differential DNA methylation between alleles is well established in imprinted genes and the X chromosomes in females but has rarely been reported at non-imprinted loci on autosomes...
  2. ncbi DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones
    Yingying Zhang
    School of Engineering and Science, Jacobs University Bremen, Bremen, Germany
    Methods Mol Biol 507:177-87. 2009
    ..In addition, we present tools for the web display of primary data and data analysis (BiQ Analyzer, BDPC) and describe the setup of a sequencing and analysis pipeline for medium to high throughput...
  3. ncbi BISMA--fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences
    Christian Rohde
    School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, 28725 Bremen, Germany
    BMC Bioinformatics 11:230. 2010
    ..A region of interest is targeted by PCR and about 20-50 subcloned DNA molecules are usually analyzed, to determine the methylation status at single CpG sites and molecule resolution...
  4. ncbi New clustering module in BDPC bisulfite sequencing data presentation and compilation web application for DNA methylation analyses
    Christian Rohde
    School of Engineering and Science, Jacobs University Bremen, Bremen, Germany
    Biotechniques 47:781-3. 2009
    ..It can also be used for data not processed by BDPC. In addition, several functions of the existing BDPC compilation module have been improved...
  5. ncbi DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution
    Yingying Zhang
    School of Engineering and Science, Jacobs University Bremen, Bremen, Germany
    PLoS Genet 5:e1000438. 2009
    ..Further, we illustrate genotype-epigenotype interactions by showing novel examples of allele-specific methylation...
  6. ncbi Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis
    Christian Rohde
    School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, 28725 Bremen, Germany
    Nucleic Acids Res 36:e34. 2008
    ..v) A condensed file, containing all primary data in simplified format for further downstream data analysis and (vi) a custom track file for display of the results in the UCSC genome browser...
  7. ncbi DNA methyltransferase assays
    Renata Z Jurkowska
    Biochemistry Lab, School of Engineering and Science, Jacobs University Bremen, Bremen, Germany
    Methods Mol Biol 791:157-77. 2011
    ..3) A novel fluorescence-coupled, restriction-based assay suitable for high-throughput screening of DNA methyltransferase inhibitors...
  8. ncbi Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail
    Yingying Zhang
    Biochemistry Laboratory, School of Engineering and Science, Jacobs University Bremen, Campus Ring 1, 28759 Bremen, Germany
    Nucleic Acids Res 38:4246-53. 2010
    ..Our in vitro results recapitulate DNA methylation patterns observed in genome-wide DNA methylation studies...