Stephan Herget

Summary

Affiliation: German Cancer Research Center
Country: Germany

Publications

  1. ncbi GlycoCT-a unifying sequence format for carbohydrates
    S Herget
    German Cancer Research Center, Molecular Structure Analysis W160, Molecular Modeling Group, Im Neuenheimer Feld 280, D 69120 Heidelberg, Germany
    Carbohydr Res 343:2162-71. 2008
  2. ncbi Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans
    Stephan Herget
    Core Facility Molecular Structure Analysis W160, German Cancer Research Center, Heidelberg, Germany
    BMC Struct Biol 8:35. 2008
  3. ncbi Glycome-DB.org: a portal for querying across the digital world of carbohydrate sequences
    René Ranzinger
    German Cancer Research Center, Molecular Structure Analysis W160, Molecular Modeling Group, Im Neuenheimer Feld 280, D 69120 Heidelberg, Germany
    Glycobiology 19:1563-7. 2009
  4. ncbi GlycomeDB--a unified database for carbohydrate structures
    René Ranzinger
    German Cancer Research Center, DKFZ, Core Facility, Molecular Structure Analysis, W160, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
    Nucleic Acids Res 39:D373-6. 2011
  5. ncbi GlycomeDB - integration of open-access carbohydrate structure databases
    René Ranzinger
    German Cancer Research Center DKFZ, Core Facility Molecular Structural Analysis, Im Neuenheimer Feld 280, Heidelberg, Germany
    BMC Bioinformatics 9:384. 2008
  6. ncbi Exploring the structural diversity of mammalian carbohydrates ("glycospace") by statistical databank analysis
    Daniel B Werz
    Laboratory for Organic Chemistry, Swiss Federal Institute of Technology ETH Zurich, HCI F 315, Wolfgang Pauli Str 10, CH 8093 Zurich, Switzerland
    ACS Chem Biol 2:685-91. 2007

Detail Information

Publications6

  1. ncbi GlycoCT-a unifying sequence format for carbohydrates
    S Herget
    German Cancer Research Center, Molecular Structure Analysis W160, Molecular Modeling Group, Im Neuenheimer Feld 280, D 69120 Heidelberg, Germany
    Carbohydr Res 343:2162-71. 2008
    ..GlycoCT encompasses the capabilities of the heterogeneous landscape of digital encoding schemata in glycomics and is thus a step forward on the way to a unified and broadly accepted sequence format in glycobioinformatics...
  2. ncbi Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans
    Stephan Herget
    Core Facility Molecular Structure Analysis W160, German Cancer Research Center, Heidelberg, Germany
    BMC Struct Biol 8:35. 2008
    ..Since bacterial glycans are typically displayed at the cell surface, they can interact with the environment and, therefore, have significant biomedical importance...
  3. ncbi Glycome-DB.org: a portal for querying across the digital world of carbohydrate sequences
    René Ranzinger
    German Cancer Research Center, Molecular Structure Analysis W160, Molecular Modeling Group, Im Neuenheimer Feld 280, D 69120 Heidelberg, Germany
    Glycobiology 19:1563-7. 2009
    ..With GlycomeDB (www.glycome-db.org), it is now possible to use a single portal to access all digitally encoded, public structural data in glycomics and to perform complex queries with the help of a web-based user interface...
  4. ncbi GlycomeDB--a unified database for carbohydrate structures
    René Ranzinger
    German Cancer Research Center, DKFZ, Core Facility, Molecular Structure Analysis, W160, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
    Nucleic Acids Res 39:D373-6. 2011
    ..The complete database can be downloaded freely or accessed through a Web-interface (www.glycome-db.org) that provides flexible and powerful search functionalities...
  5. ncbi GlycomeDB - integration of open-access carbohydrate structure databases
    René Ranzinger
    German Cancer Research Center DKFZ, Core Facility Molecular Structural Analysis, Im Neuenheimer Feld 280, Heidelberg, Germany
    BMC Bioinformatics 9:384. 2008
    ..For each database, different encoding schemes for residues and sequence topology were designed. Therefore, it is virtually impossible to obtain an overview of all deposited structures or to compare the contents of the various databases...
  6. ncbi Exploring the structural diversity of mammalian carbohydrates ("glycospace") by statistical databank analysis
    Daniel B Werz
    Laboratory for Organic Chemistry, Swiss Federal Institute of Technology ETH Zurich, HCI F 315, Wolfgang Pauli Str 10, CH 8093 Zurich, Switzerland
    ACS Chem Biol 2:685-91. 2007
    ..This potential building block set was correlated with the accessible 3299 mammalian carbohydrate structures in the GLYCOSCIENCES.de databank. Only 36 building blocks are required to construct 75% of the 3299 mammalian oligosaccharides...