Matthias Frisch

Summary

Affiliation: Genomatix Software GmbH
Country: Germany

Publications

  1. ncbi In silico prediction of scaffold/matrix attachment regions in large genomic sequences
    Matthias Frisch
    Genomatix Software, D 80339 München, Germany
    Genome Res 12:349-54. 2002
  2. ncbi LitInspector: literature and signal transduction pathway mining in PubMed abstracts
    Matthias Frisch
    Genomatix Software, 80335 Munich, Germany
    Nucleic Acids Res 37:W135-40. 2009
  3. ncbi S/MARt DB: a database on scaffold/matrix attached regions
    Ines Liebich
    Research Group Bioinformatics, GBF, Mascheroder Weg 1, D 38124 Braunschweig, Germany
    Nucleic Acids Res 30:372-4. 2002
  4. ncbi Selection theory for marker-assisted backcrossing
    Matthias Frisch
    Institute of Plant Breeding, Seed Science and Population Genetics, University of Hohenheim, Stuttgart, Germany
    Genetics 170:909-17. 2005
  5. ncbi Androgen receptor binding sites identified by a GREF_GATA model
    Katsuaki Masuda
    Center for Prostate Disease Research, Department of Surgery, Uniformed Services University, Rockville, MD 20852, USA
    J Mol Biol 353:763-71. 2005
  6. ncbi Comparison of the observed with the simulated distributions of the parental genome contribution in two marker-assisted backcross programs in rice
    Vanessa Prigge
    Institute of Plant Breeding, Seed Science, and Population Genetics, University of Hohenheim, 70593, Stuttgart, Germany
    Theor Appl Genet 116:739-44. 2008

Collaborators

Detail Information

Publications6

  1. ncbi In silico prediction of scaffold/matrix attachment regions in large genomic sequences
    Matthias Frisch
    Genomatix Software, D 80339 München, Germany
    Genome Res 12:349-54. 2002
    ..To demonstrate the feasibility of large-scale S/MAR prediction, we analyzed the recently published chromosome 22 sequence and found 1198 S/MAR candidates...
  2. ncbi LitInspector: literature and signal transduction pathway mining in PubMed abstracts
    Matthias Frisch
    Genomatix Software, 80335 Munich, Germany
    Nucleic Acids Res 37:W135-40. 2009
    ..g. signaling cascade). The performance was checked for 10 randomly selected genes. Eighty-two per cent of the 38 predicted pathway associations were correct. LitInspector is freely available at http://www.litinspector.org/...
  3. ncbi S/MARt DB: a database on scaffold/matrix attached regions
    Ines Liebich
    Research Group Bioinformatics, GBF, Mascheroder Weg 1, D 38124 Braunschweig, Germany
    Nucleic Acids Res 30:372-4. 2002
    ..S/MARt DB is closely linked to the TRANSFAC database on transcription factors and their binding sites. It is freely accessible through the World Wide Web (http://transfac.gbf.de/SMARtDB/) for non-profit research...
  4. ncbi Selection theory for marker-assisted backcrossing
    Matthias Frisch
    Institute of Plant Breeding, Seed Science and Population Genetics, University of Hohenheim, Stuttgart, Germany
    Genetics 170:909-17. 2005
    ..Selection of promising individuals is illustrated with experimental data from sugar beet. The presented approach can assist geneticists and breeders in the efficient design of gene introgression programs...
  5. ncbi Androgen receptor binding sites identified by a GREF_GATA model
    Katsuaki Masuda
    Center for Prostate Disease Research, Department of Surgery, Uniformed Services University, Rockville, MD 20852, USA
    J Mol Biol 353:763-71. 2005
    ..Our findings indicate that complex models based on datasets selected by biological function can be superior predictors as they recognize TFBSs in their functional context...
  6. ncbi Comparison of the observed with the simulated distributions of the parental genome contribution in two marker-assisted backcross programs in rice
    Vanessa Prigge
    Institute of Plant Breeding, Seed Science, and Population Genetics, University of Hohenheim, 70593, Stuttgart, Germany
    Theor Appl Genet 116:739-44. 2008
    ..We conclude that computer simulations are a useful tool for pre-experiment estimation of selection response in marker-assisted backcrossing...