Reinhard Schneider

Summary

Affiliation: European Molecular Biology Laboratory
Country: Germany

Publications

  1. ncbi Using graph theory to analyze biological networks
    Georgios A Pavlopoulos
    Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece
    BioData Min 4:10. 2011
  2. ncbi A survey of visualization tools for biological network analysis
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BioData Min 1:12. 2008
  3. ncbi A reference guide for tree analysis and visualization
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BioData Min 3:1. 2010
  4. ncbi Arena3D: visualization of biological networks in 3D
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BMC Syst Biol 2:104. 2008
  5. ncbi GIBA: a clustering tool for detecting protein complexes
    Charalampos N Moschopoulos
    Pattern Recognition Lab, Department of Computer Engineering and Informatics, University of Patras, Patra, Rio, GR 26500, Greece
    BMC Bioinformatics 10:S11. 2009
  6. ncbi jClust: a clustering and visualization toolbox
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg, Germany
    Bioinformatics 25:1994-6. 2009
  7. ncbi OnTheFly: a tool for automated document-based text annotation, data linking and network generation
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg
    Bioinformatics 25:977-8. 2009
  8. ncbi Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence
    Adriano Barbosa-Silva
    Laboratório de Biodados, Dep, Bioquímica e Imunologia, Instituto de Ciencias Biologicas, UFMG, Av, Antonio Carlos 6627, Belo Horizonte, MG, Brasil
    BMC Bioinformatics 9:141. 2008
  9. ncbi GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques
    Venkata P Satagopam
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg D69117, Germany
    Database (Oxford) 2010:baq019. 2010
  10. ncbi From experimental setup to bioinformatics: an RNAi screening platform to identify host factors involved in HIV-1 replication
    Kathleen Börner
    Department of Infectious Diseases, Virology, University of Heidelberg, Heidelberg, Germany
    Biotechnol J 5:39-49. 2010

Collaborators

Detail Information

Publications10

  1. ncbi Using graph theory to analyze biological networks
    Georgios A Pavlopoulos
    Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece
    BioData Min 4:10. 2011
    ..This network profiling combined with knowledge extraction will help us to better understand the biological significance of the system...
  2. ncbi A survey of visualization tools for biological network analysis
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BioData Min 1:12. 2008
    ..We comment on the functionality, the limitations and the specific strengths of these tools, and how these tools could be further developed in the direction of data integration and information sharing...
  3. ncbi A reference guide for tree analysis and visualization
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BioData Min 3:1. 2010
    ..Here we focus on freely available software that offers to the users various tree-representation methodologies for biological data analysis...
  4. ncbi Arena3D: visualization of biological networks in 3D
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany
    BMC Syst Biol 2:104. 2008
    ..Our goal is to enable many thousands of entities to be visualized meaningfully and with high performance...
  5. ncbi GIBA: a clustering tool for detecting protein complexes
    Charalampos N Moschopoulos
    Pattern Recognition Lab, Department of Computer Engineering and Informatics, University of Patras, Patra, Rio, GR 26500, Greece
    BMC Bioinformatics 10:S11. 2009
    ....
  6. ncbi jClust: a clustering and visualization toolbox
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg, Germany
    Bioinformatics 25:1994-6. 2009
    ..AVAILABILITY: http://jclust.embl.de/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online...
  7. ncbi OnTheFly: a tool for automated document-based text annotation, data linking and network generation
    Georgios A Pavlopoulos
    Structural and Computational Biology Unit, EMBL Meyerhofstrasse 1, Heidelberg
    Bioinformatics 25:977-8. 2009
    ..AVAILABILITY: http://onthefly.embl.de, http://onthefly.embl.de/FAQ.html. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online...
  8. ncbi Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence
    Adriano Barbosa-Silva
    Laboratório de Biodados, Dep, Bioquímica e Imunologia, Instituto de Ciencias Biologicas, UFMG, Av, Antonio Carlos 6627, Belo Horizonte, MG, Brasil
    BMC Bioinformatics 9:141. 2008
    ....
  9. ncbi GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques
    Venkata P Satagopam
    Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg D69117, Germany
    Database (Oxford) 2010:baq019. 2010
    ..Database URLs: http://schneider.embl.de/human_gpdb; http://bioinformatics.biol.uoa.gr/human_gpdb/..
  10. ncbi From experimental setup to bioinformatics: an RNAi screening platform to identify host factors involved in HIV-1 replication
    Kathleen Börner
    Department of Infectious Diseases, Virology, University of Heidelberg, Heidelberg, Germany
    Biotechnol J 5:39-49. 2010
    ..The ViroQuant-CellNetworks RNAi Screening core facility is an integral part of the recently founded BioQuant centre for systems biology at the University of Heidelberg and will provide service to external users in the near future...