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Genomes and Genes | M SarasteSummaryAffiliation: European Molecular Biology Laboratory Country: Germany Publications
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Publications
Oxidative phosphorylation at the fin de siècleM Saraste
European Molecular Biology Laboratory, Meyerhofstrasse 1, Postfach 102209, D 69012, Heidelberg, Germany
Science 283:1488-93. 1999..This work, and new enzymological studies of ATP synthase's unusual catalytic mechanism, are reviewed here...
Crystal structure of the membrane-exposed domain from a respiratory quinol oxidase complex with an engineered dinuclear copper centerM Wilmanns
European Molecular Biology Laboratory, Heidelberg, Germany
Proc Natl Acad Sci U S A 92:11955-9. 1995..The residues that are distinct in cytochrome c and quinol oxidases are around the dinuclear copper center. Structural comparison suggests a common ancestry for subunit II of cytochrome oxidase and blue copper-binding proteins...
Structure of the pleckstrin homology domain from beta-spectrinM J Macias
European Molecular Biology Laboratory, Heidelberg, Germany
Nature 369:675-7. 1994..There is a distant relationship to the peptidyl-prolyl-cis-trans-isomerase FKBP in which this pocket is involved in the binding of the macrocyclic compound FK506 (refs 8-11)...
Structure of the PH domain from Bruton's tyrosine kinase in complex with inositol 1,3,4,5-tetrakisphosphateE Baraldi
European Molecular Biology Laboratory, Meyerhofstrasse 1, Postfach 102209, D 69012 Heidelberg, Germany
Structure 7:449-60. 1999..Point mutations in the PH domain might abolish membrane binding, preventing signalling via Btk...
Reaction of carbon monoxide with the reduced active site of bacterial nitric oxide reductaseJ H Hendriks
European Molecular Biology Laboratory, Meyerhofstrasse 1 D-69126 Heidelberg, Germany
Biochemistry 40:13361-9. 2001..2 x 10(5) M(-1) x s(-1)). This suggests that an existing heme distal ligand (water/OH-) may be displaced to elicit the spin-state change observed in the RT-MCD spectrum...
A second terminal oxidase in Sulfolobus acidocaldariusM Lubben
European Molecular Biology Laboratory, Heidelberg, Germany
Eur J Biochem 224:151-9. 1994..We suggest that SoxM is the core component of a second terminal oxidase complex and that this complex may share a subunit (SoxC) with the SoxABCD complex...
Crystallization and preliminary X-ray analysis of the periplasmic fragment of CyoA-a subunit of the Escherichia coli cytochrome o complexJ van der Oost
European Molecular Biology Laboratory, Heidelberg, Germany
J Mol Biol 229:794-6. 1993..coli, purified and crystallized. Crystals were grown using ammonium sulphate as a precipitant. They have space group I222 or I2(1)2(1)2(1) and diffract X-rays to 2.3 A resolution...
Crystal structure of the SH3 domain in human Fyn; comparison of the three-dimensional structures of SH3 domains in tyrosine kinases and spectrinM E Noble
EMBL, Heidelberg, Germany
EMBO J 12:2617-24. 1993..These loops are different in tyrosine kinase and spectrin SH3 domains. They could modulate the binding properties of the aromatic surface...
Structure of the PH domain and Btk motif from Bruton's tyrosine kinase: molecular explanations for X-linked agammaglobulinaemiaM Hyvonen
European Molecular Biology Laboratory, Heidelberg, Germany
EMBO J 16:3396-404. 1997..Our structure opens up new ways to study the role of the PH domain and Btk motif in the cellular function of Btk and the molecular basis of its dysfunction in XLA patients...
Bacillus subtilis cytochrome oxidase mutants: biochemical analysis and genetic evidence for two aa3-type oxidasesJ van der Oost
European Molecular Biology Laboratory, Heidelberg, Germany
Mol Microbiol 5:2063-72. 1991..Radioactive haem-labelling was used to identify subunit II, which contains a haem C, and cytochrome c-550 among the membrane-bound c-type cytochromes of B. subtilis...
New archaebacterial genes coding for redox proteins: implications for the evolution of aerobic metabolismJ Castresana
European Molecular Biology Laboratory, Heidelberg, Germany
J Mol Biol 250:202-10. 1995..A phylogenetic analysis of the new protein sequences gives support to the view that an elaborate aerobic respiratory chain was already present in the last common ancestor of all living organisms...
High-resolution crystal structures of tyrosine kinase SH3 domains complexed with proline-rich peptidesA Musacchio
European Molecular Biology Laboratory, Heidelberg, Germany
Nat Struct Biol 1:546-51. 1994..Residues 4-10 of the peptide adopt the conformation of a left-handed polyproline helix type II. Binding of the proline at position 2 requires a kink at the non-proline position 3...
Solution structure of the spectrin repeat: a left-handed antiparallel triple-helical coiled-coilJ Pascual
European Molecular Biology Laboratory, Meyerhofstr 1, Heidelberg, 69012, Germany
J Mol Biol 273:740-51. 1997..Model building by homology of the "tetramerization" repeat from human erythrocyte spectrin illuminates the possible role of point mutations which cause hemolytic anemias...
States and transitions during forced unfolding of a single spectrin repeatP F Lenne
European Molecular Biology, Cell Biology and Biophysics Programme, P O Box 10 2209, D 69012, Heidelberg, Germany
FEBS Lett 476:124-8. 2000..Single molecule force spectroscopy appears to open a new window for the analysis of transition probabilities between different conformational states...
Crystal structure of the alpha-actinin rod reveals an extensive torsional twistJ Ylanne
European Molecular Biology Laboratory, EMBL, Structural and Computational Biology Programme, Meyerhofstrasse 1, D 69117, Heidelberg, Germany
Structure 9:597-604. 2001..The rod domain determines the distance between cross-linked actin filaments and also serves as an interaction site for several cytoskeletal and signaling proteins...
Crystallization and preliminary X-ray diffraction studies of perchloric acid soluble protein (PSP) from rat liverK Djinovic Carugo
European Molecular Biology Laboratory, Meyerhofstrasse 1, D 69012 Heidelberg, Germany
Acta Crystallogr D Biol Crystallogr 55:667-8. 1999..90 A and two molecules per asymmetric unit, as indicated from a Vm value of 2.12 A3 Da-1 and self-rotation function computation. Screening for heavy-atom derivatives identified a platinum compound and xenon that bind to the protein...
Two cysteines, two histidines, and one methionine are ligands of a binuclear purple copper centerM Kelly
European Molecular Biology Laboratory, Heidelberg, Germany
J Biol Chem 268:16781-7. 1993..In contrast, substitution of the invariant glutamate residue, which is located between the copper-binding cysteines, leads to a minor perturbation of the optical spectrum...
Properties of the detergent solubilised cytochrome c oxidase (cytochrome cbb(3)) purified from Pseudomonas stutzeriA Urbani
European Molecular Biology Laboratory, Structural and Computational Biology Programme, Meyerhof Str 1, D 69117 Heidelberg, Germany
FEBS Lett 508:29-35. 2001..Crystals diffracting to 5.0 A resolution have been grown by the vapour diffusion sitting drop method to an average size of 0.1 x 0.1 x 0.3 mm. This is the first crystallisation report of a (cbb(3))-type oxidase...
Molecular mechanism of the calcium-induced conformational change in the spectrin EF-handsG Trave
European Molecular Biology Laboratory, Heidelberg, Germany
EMBO J 14:4922-31. 1995..Our results allow formulation of the rules which govern the movement induced by calcium. These rules may be generalized to other EF-hands since the key residues involved are conserved within the calmodulin family...
From NO to OO: nitric oxide and dioxygen in bacterial respirationJ Hendriks
European Molecular Biology Laboratory, Heidelberg, Germany
J Bioenerg Biomembr 30:15-24. 1998..This review is a brief summary of the current knowledge on molecular biology, structure, and bioenergetics of NOR as a member of the oxidase superfamily...
The Bacillus subtilis cytochrome-c oxidase. Variations on a conserved protein themeM Saraste
European Molecular Biology Laboratory, Heidelberg, Federal Republic of Germany
Eur J Biochem 195:517-25. 1991..subtilis [de Vrij, W., Azzi, A. & Konings, W. N. (1983) Eur. J. Biochem. 131, 97-103] is not encoded by the ctaC-F genes; thus, there seems to be two different cytochrome-aa3-type oxidases in this Gram-positive bacterium...
An archaebacterial terminal oxidase combines core structures of two mitochondrial respiratory complexesM Lubben
European Molecular Biology Laboratory, Heidelberg, FRG
EMBO J 11:805-12. 1992....
Structure of the binding site for inositol phosphates in a PH domainM Hyvonen
European Molecular Biology Laboratory, Heidelberg, Germany
EMBO J 14:4676-85. 1995..They could also participate in a response to a second messenger such as inositol trisphosphate, organizing cross-roads in cellular signalling...
Crystal structure of a calponin homology domainK Djinovic Carugo
Nat Struct Biol 4:175-9. 1997..The three-dimensional structure of the calponin homology domain present in many actin binding cytoskeletal and signal-transducing proteins has been determined at 2.0 A resolution...
pH-induced conformational transition in the soluble CuA domain of Paracoccus denitrificans cytochrome oxidaseS Gupta
Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India
Biochemistry 40:6180-9. 2001..The results are discussed in the light of understanding the pH-induced conformational change in the beta-barrel structure of the protein and its effect on the coordination geometry of the metal site...
Primary structure and subunit stoichiometry of F1-ATPase from bovine mitochondriaJ E Walker
J Mol Biol 184:677-701. 1985..The counterpart of the bacterial delta-subunit is bovine oligomycin sensitivity conferral protein, which helps to bind F1 to the inner mitochondrial membrane.(ABSTRACT TRUNCATED AT 400 WORDS)..
Primary structure of the brain alpha-spectrinV M Wasenius
Department of Pathology, University of Helsinki, Finland
J Cell Biol 108:79-93. 1989..Comparative analysis showed that alpha-spectrin is well conserved across the species boundaries from Xenopus to man, and that the human erythrocyte alpha-spectrin is divergent from the other spectrins...
Human laminin B1 chain. A multidomain protein with gene (LAMB1) locus in the q22 region of chromosome 7T Pikkarainen
J Biol Chem 262:10454-62. 1987..Using somatic cell hybrid methodology and in situ hybridization to metaphase chromosomes it was established that the human laminin B1 gene (LAMB1) is located in the q22 region of chromosome 7...
The unc operon. Nucleotide sequence, regulation and structure of ATP-synthaseJ E Walker
Biochim Biophys Acta 768:164-200. 1984
Structural comparisons of calponin homology domains: implications for actin bindingS Banuelos
European Molecular Biology Laboratory Postfach 10 2209 D 69012 Heidelberg, Germany
Structure 6:1419-31. 1998..The three-dimensional structures of three CH domains are known, but they have not yet clarified the molecular details of the interaction between actin filaments and proteins harbouring CH domains...
The atp operon: nucleotide sequence of the genes for the gamma, beta, and epsilon subunits of Escherichia coli ATP synthaseM Saraste
Nucleic Acids Res 9:5287-96. 1981..The genes for the alpha and beta subunits have evolved from a common ancestor...
Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding foldJ E Walker
EMBO J 1:945-51. 1982....
Crystal structure of a Src-homology 3 (SH3) domainA Musacchio
European Molecular Biology Laboratory, Heidelberg, Germany
Nature 359:851-5. 1992..We suggest that a protein ligand binds to this conserved surface of SH3...
