Research Topics
Genomes and GenesSpecies | Alain VignalSummaryAffiliation: Institut National de la Recherche Agronomique Country: France Publications
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Publications
A review on SNP and other types of molecular markers and their use in animal geneticsAlain Vignal
Laboratoire de Genetique Cellulaire, INRA, Chemin de Borde Rouge, Auzeville BP 27, 31326 Castanet Tolosan Cedex, France
Genet Sel Evol 34:275-305. 2002..In this review, we will discuss the reasons for this apparent step backwards, and the pertinence of the use of SNPs in animal genetics, in comparison with other marker types...- A gene-based radiation hybrid map of chicken microchromosome 14: comparison to human and alignment to the assembled chicken sequenceMireille Morisson
Laboratoire de Genetique Cellulaire, Institut National de la Recherche Agronomique, Castanet Tolosan, France
Genet Sel Evol 37:229-51. 2005..Finally, the alignment of the RH map to the assembled chicken sequence showed a small number of discordances, most of which involved the same region of the chromosome spanning between 40.5 and 75.9 cR(6000) on the RH map... - Construction of a radiation hybrid map of chicken chromosome 2 and alignment to the chicken draft sequenceSophie Leroux
Laboratoire de Genetique Cellulaire, INRA, Castanet Tolosan, 31326, France
BMC Genomics 6:12. 2005..Finally, all markers from the RH map were localised on the chicken draft sequence assembly to check for eventual discordances... - Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouseMireille Morisson
Laboratoire de Genetique Cellulaire, INRA, Chemin de Borde Rouge, 31326, Castanet Tolosan, France
Mamm Genome 15:732-9. 2004..The marker order is in good agreement with the genetic map and comparison with the human and mouse sequence maps revealed a number of internal rearrangements... - Integrative mapping analysis of chicken microchromosome 16 organizationRomain Solinhac
UMR INRA ENVT Laboratoire de Génétique Cellulaire, INRA, Castanet Tolosan, 31326, France
BMC Genomics 11:616. 2010..The purpose of the present study is to construct and present high resolution integrated maps of GGA16 to refine its organization and improve its coverage with genetic markers... - Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mappingMarine Douaud
UMR INRA ENVT Laboratoire de Génétique Cellulaire, INRA, Castanet Tolosan, 31326, France
BMC Genomics 9:129. 2008..The chrUn is composed of sequence contigs not assigned to named chromosomes. To identify and map sequence belonging to the microchromosomes we used a comparative mapping strategy, and we focused on the small linkage group E26C13... - Identification of QTL controlling meat quality traits in an F2 cross between two chicken lines selected for either low or high growth rateJavad Nadaf
Station de Recherches Avicoles, INRA, Centre de Recherches de Tours, Nouzilly, France
BMC Genomics 8:155. 2007..A total of 698 animals in 50 full-sib families were genotyped for 108 microsatellite markers covering 21 linkage groups... - Integrated maps in quail (Coturnix japonica) confirm the high degree of synteny conservation with chicken (Gallus gallus) despite 35 million years of divergenceBoniface B Kayang
Laboratoire de Genetique Cellulaire, Centre INRA de Toulouse, BP 52627 Auzeville, 31326 Castanet Tolosan, France
BMC Genomics 7:101. 2006..Quail genomics will benefit from the extension and the integration of these maps... - Genetic control of resistance to salmonellosis and to Salmonella carrier-state in fowl: a reviewFanny Calenge
INRA, UR Unité de Recherches Avicoles, Nouzilly, France
Genet Sel Evol 42:11. 2010..This article reviews the main Salmonella infection models and chicken lines studied under a historical perspective and then the candidate genes and QTL identified so far... - Non PCR-amplified Transcripts and AFLP fragments as reduced representations of the quail genome for 454 Titanium sequencingSophie Leroux
UMR INRA ENVT Laboratoire de Génétique Cellulaire, INRA, 31326 Castanet Tolosan, France
BMC Res Notes 3:214. 2010.... - AFLP linkage map of the Japanese quail Coturnix japonicaOdile Roussot
Laboratoire de Genetique Cellulaire, Institut National de la Recherche Agronomique, 31326 Castanet Tolosan, France
Genet Sel Evol 35:559-72. 2003..This AFLP map of the Japanese quail already provides an efficient tool for quantitative trait loci (QTL) mapping... - Cloning of ovocalyxin-36, a novel chicken eggshell protein related to lipopolysaccharide-binding proteins, bactericidal permeability-increasing proteins, and plunc family proteinsJoel Gautron
Institut National de la Recherche Agronomique, UR83 Unité de Recherches Avicoles, F 37380 Nouzilly, France
J Biol Chem 282:5273-86. 2007..OCX-36 may therefore participate in natural defense mechanisms that keep the egg free of pathogens... - New QTL for resistance to Salmonella carrier-state identified on fowl microchromosomesFanny Calenge
INRA UMR 083 Unité de Recherches Avicoles, 37380 Nouzilly, France
Mol Genet Genomics 285:237-43. 2011.... - Microsatellite mapping of QTL affecting growth, feed consumption, egg production, tonic immobility and body temperature of Japanese quailFrancis Minvielle
Génétique et Diversité Animales, Institut National de la Recherche Agronomique, Centre de Jouy, 78352 Jouy en Josas, France
BMC Genomics 6:87. 2005.... - Search for QTL affecting the shape of the egg laying curve of the Japanese quailFrancis Minvielle
Génétique et Diversité Animales, Institut National de la Recherche Agronomique, Centre de Jouy, 78352 Jouy en Josas, France
BMC Genet 7:26. 2006..The purpose of this study was to perform the first QTL search for traits involved in shaping the egg laying curve, in an F2 experiment with 359 female Japanese quail... - ChickRH6: a chicken whole-genome radiation hybrid panelMireille Morisson
Laboratoire de Genetique Cellulaire, Institut National de la Recherche Agronomique, 31326 Castanet Tolosan, France
Genet Sel Evol 34:521-33. 2002..9%, were selected for the final panel. This panel will be a valuable resource for fine mapping of markers and genes in the chicken, and will also help in building BAC contigs... - Epilepsy caused by an abnormal alternative splicing with dosage effect of the SV2A gene in a chicken modelMarine Douaud
INRA ENVT, Laboratoire de Genetique Cellulaire, Castanet Tolosan, France
PLoS ONE 6:e26932. 2011..Consequently, SV2A is a very attractive candidate gene for analysis in the context of both mono- and polygenic generalized epilepsies in humans... - A high-resolution radiation hybrid map of chicken chromosome 5 and comparison with human chromosomesFrederique Pitel
Laboratoire de Genetique Cellulaire, INRA, Castanet Tolosan, 31326, France
BMC Genomics 5:66. 2004..Finally, this RH map was used for testing the accuracy of the chicken genome assembly for chromosome 5... - Fatness QTL on chicken chromosome 5 and interaction with sexBehnam Abasht
UMR Inra Agrocampus Génétique animale, 35042 Rennes, France
Genet Sel Evol 38:297-311. 2006..They also indicate that fat QTL alleles were segregating in both fat and lean lines... - Biodiversity of 52 chicken populations assessed by microsatellite typing of DNA poolsJossi Hillel
Department of Genetics, The Hebrew University of Jerusalem, Faculty of Agriculture, Food and Environmental Quality Sciences, Rehovot 76100, Israel
Genet Sel Evol 35:533-57. 2003..The distribution of population-specific (private) alleles and the amount of genetic variation shared among populations supports the hypothesis that the red jungle fowl is the main progenitor of the domesticated chicken... - Molecular cytogenetic definition of the chicken genome: the first complete avian karyotypeJulio S Masabanda
Cell and Chromosome Biology Group, Department of Biological Sciences, Brunel University, Uxbridge, Middlesex UB8 3PH, United Kingdom
Genetics 166:1367-73. 2004.... - Assignment of CPS1, OTC, CRYD2, ARG2 and ASS genes to the chicken RH mapTakeshi Shimogiri
Faculty of Agriculture, Kagoshima University, Kagoshima, Japan
Genet Sel Evol 36:593-9. 2004..OTC was assigned to GGA1; ARG2 to GGA5; CPS1 to GGA7; and CRYD2 to GGA19. ASS was not, however, assigned to a specific chromosomal position... - Whole genome comparative studies between chicken and turkey and their implications for avian genome evolutionDarren K Griffin
Department of Biosciences, University of Kent, Canterbury, Kent, CT2 7NJ, UK
BMC Genomics 9:168. 2008..No molecular study has yet examined conservation of avian microchromosomes, nor differences in copy number variants (CNVs) between birds... - A radiation hybrid map of chicken Chromosome 4Tarik S K M Rabie
Wageningen Institute of Animal Sciences, Animal Breeding and Genetics Group, Wageningen University, Marijkeweg 40, 6709 PG Wageningen, The Netherlands
Mamm Genome 15:560-9. 2004..This enhanced comparative mapping resolution enabled the identification of multiple rearrangements between GGA4 and human Chromosomes 4q and Xp... - Female-specific DNA sequences in the chicken genomeZur Granevitze
Robert H Smith Institute of Plant Sciences and Genetics, The Hebrew University of Jerusalem, Rehovot 76100, Israel
J Hered 98:238-42. 2007..These fragments may be used for early sexing in commercial chicken and turkey flocks... - Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolutionLadeana W Hillier
Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
Nature 432:695-716. 2004..The distinctive properties of avian microchromosomes, together with the inferred patterns of conserved synteny, provide additional insights into vertebrate chromosome architecture... - FISH on avian lampbrush chromosomes produces higher resolution gene mappingSvetlana Galkina
Biological Research Institute, Saint-Petersburg State University, Oranienbaumskoie shosse 2, Stary Peterhof, 198504, Saint-Petersburg, Russia
Genetica 128:241-51. 2006..The centromeres of chicken and quail chromosomes 4 seem to have formed independently after centric fusion of ancestral chromosome 4 and a microchromosome... - A genome scan for quantitative trait loci affecting the Salmonella carrier-state in the chickenPierre Tilquin
Unité de Génétique, Faculte d Ingenierie Biologique, agronomique et environnementale, Universite Catholique de Louvain, Croix du Sud 2 bte 14, B 1348 Louvain la Neuve, Belgium
Genet Sel Evol 37:539-61. 2005..These results suggest new regions of interest and the putative role of SAL1... - Mapping quantitative trait loci affecting fatness and breast muscle weight in meat-type chicken lines divergently selected on abdominal fatnessSandrine Lagarrigue
UMR Inra Agrocampus Génétique animale, 35042 Rennes, France
Genet Sel Evol 38:85-97. 2006..Two significant QTL were identified on chromosomes 1 and 5 with effects of about one within-family residual standard deviation. One breast muscle QTL was identified on GGA1 with an effect of 2.0 within-family residual standard deviation... - Genetic linkage and expression analysis of SREBP and lipogenic genes in fat and lean chickenSirine Assaf
UMR Génétique Animale, Institut National de la Recherche Agronomique Ecole Nationale Supérieure Agronomique de Rennes, 65 rue de Saint Brieuc, 35042 Rennes Cedex, France
Comp Biochem Physiol B Biochem Mol Biol 137:433-41. 2004..These results emphasised the interest to perform expression and genetic linkage studies jointly, to progress in identifying the genetic origin of variability of a quantitative trait...