Csaba Ortutay

Summary

Affiliation: University of Tampere
Country: Finland

Publications

  1. ncbi PseudoGeneQuest - service for identification of different pseudogene types in the human genome
    Csaba Ortutay
    Institute of Medical Technology, University of Tampere, FI 33014 Tampere, Finland
    BMC Bioinformatics 9:299. 2008
  2. ncbi Immunome knowledge base (IKB): an integrated service for immunome research
    Csaba Ortutay
    Institute of Medical Technology, FI 33014 University of Tampere, Finland
    BMC Immunol 10:3. 2009
  3. ncbi Molecular characterization of the immune system: emergence of proteins, processes, and domains
    Csaba Ortutay
    Institute of Medical Technology, University of Tampere, 33014, Tampere, Finland
    Immunogenetics 59:333-48. 2007
  4. ncbi Immunome: a reference set of genes and proteins for systems biology of the human immune system
    Csaba Ortutay
    Institute of Medical Technology, FI-33014 University of Tampere, Finland
    Cell Immunol 244:87-9. 2006
  5. ncbi Immunity genes and their orthologs: a multi-species database
    Kathryn Rannikko
    Bioinformatics Research Group, Institute of Medical Technology, FI 33014, University of Tampere, Finland
    Int Immunol 19:1361-70. 2007
  6. ncbi Identification of candidate disease genes by integrating Gene Ontologies and protein-interaction networks: case study of primary immunodeficiencies
    Csaba Ortutay
    Institute of Medical Technology, FI 33014 University of Tampere and Tampere University Hospital, FI 33520 Tampere, Finland
    Nucleic Acids Res 37:622-8. 2009
  7. ncbi Systematic classification of primary immunodeficiencies based on clinical, pathological, and laboratory parameters
    Crina Samarghitean
    Institute of Medical Technology, University of Tampere, Tampere, Finland
    J Immunol 183:7569-75. 2009
  8. ncbi Phylogeny of Tec family kinases identification of a premetazoan origin of Btk, Bmx, Itk, Tec, Txk, and the Btk regulator SH3BP5
    Csaba Ortutay
    Institute of Medical Technology, FI 33014 University of Tampere, Finland
    Adv Genet 64:51-80. 2008
  9. ncbi Carbonic anhydrase related protein VIII and its role in neurodegeneration and cancer
    Ashok Aspatwar
    University of Tampere School of Medicine, B Building, University of Tampere, Tampere, Finland
    Curr Pharm Des 16:3264-76. 2010
  10. ncbi Divergent microsatellite evolution in the human and chimpanzee lineages
    Zoltán Gáspári
    Institute of Chemistry, Eotvos Lorand University, Pazmany Peter setany 1 A, H 1117 Budapest, Hungary
    FEBS Lett 581:2523-6. 2007

Collaborators

Detail Information

Publications11

  1. ncbi PseudoGeneQuest - service for identification of different pseudogene types in the human genome
    Csaba Ortutay
    Institute of Medical Technology, University of Tampere, FI 33014 Tampere, Finland
    BMC Bioinformatics 9:299. 2008
    ..PseudoGeneQuest is an online tool to search the human genome for a given query sequence and to identify different types of pseudogenes as well as novel genes and gene fragments...
  2. ncbi Immunome knowledge base (IKB): an integrated service for immunome research
    Csaba Ortutay
    Institute of Medical Technology, FI 33014 University of Tampere, Finland
    BMC Immunol 10:3. 2009
    ..However, these data are scattered into several databases and literature and therefore integration is needed...
  3. ncbi Molecular characterization of the immune system: emergence of proteins, processes, and domains
    Csaba Ortutay
    Institute of Medical Technology, University of Tampere, 33014, Tampere, Finland
    Immunogenetics 59:333-48. 2007
    ..Immunome genes were found to have three types of emergence in independent studies of their ontologies, domains, and functions...
  4. ncbi Immunome: a reference set of genes and proteins for systems biology of the human immune system
    Csaba Ortutay
    Institute of Medical Technology, FI-33014 University of Tampere, Finland
    Cell Immunol 244:87-9. 2006
    ..The reference set and the categories are freely available in the immunome database at http://bioinf.uta.fi/Immunome/...
  5. ncbi Immunity genes and their orthologs: a multi-species database
    Kathryn Rannikko
    Bioinformatics Research Group, Institute of Medical Technology, FI 33014, University of Tampere, Finland
    Int Immunol 19:1361-70. 2007
    ..All the immunity genes and their evidence of immune function, orthologs and ortholog groups have been combined into an open access database -- ImmunomeBase, which is publicly available from (http://bioinf.uta.fi/ImmunomeBase)...
  6. ncbi Identification of candidate disease genes by integrating Gene Ontologies and protein-interaction networks: case study of primary immunodeficiencies
    Csaba Ortutay
    Institute of Medical Technology, FI 33014 University of Tampere and Tampere University Hospital, FI 33520 Tampere, Finland
    Nucleic Acids Res 37:622-8. 2009
    ..The method can be generalized for any disease group with sufficient information...
  7. ncbi Systematic classification of primary immunodeficiencies based on clinical, pathological, and laboratory parameters
    Crina Samarghitean
    Institute of Medical Technology, University of Tampere, Tampere, Finland
    J Immunol 183:7569-75. 2009
    ..The method can be applied to any group of diseases...
  8. ncbi Phylogeny of Tec family kinases identification of a premetazoan origin of Btk, Bmx, Itk, Tec, Txk, and the Btk regulator SH3BP5
    Csaba Ortutay
    Institute of Medical Technology, FI 33014 University of Tampere, Finland
    Adv Genet 64:51-80. 2008
    ..It is conserved in choanoflagellates and interestingly exists also in nematodes, which do not express TFKs, suggesting a broader function in addition to Btk regulation. The related SH3BP5-like protein is not found in Nematodes...
  9. ncbi Carbonic anhydrase related protein VIII and its role in neurodegeneration and cancer
    Ashok Aspatwar
    University of Tampere School of Medicine, B Building, University of Tampere, Tampere, Finland
    Curr Pharm Des 16:3264-76. 2010
    ..The present review article describes the previous data on CARP VIII, including its structure, role in neurodegeneration and cancer; and bioinformatic and expression analyses recently performed in our laboratory...
  10. ncbi Divergent microsatellite evolution in the human and chimpanzee lineages
    Zoltán Gáspári
    Institute of Chemistry, Eotvos Lorand University, Pazmany Peter setany 1 A, H 1117 Budapest, Hungary
    FEBS Lett 581:2523-6. 2007
    ..In this paper, we show that this is valid for most of the chimpanzee genome but not for a number of human chromosomes. Our results suggest accelerated evolution of microsatellites in the human genome relative to the chimpanzee lineage...
  11. ncbi Speciation in Chlamydia: genomewide phylogenetic analyses identified a reliable set of acquired genes
    Csaba Ortutay
    Department of Genetics, , , Budapest H-1117, Hungary
    J Mol Evol 57:672-80. 2003
    ..Our analysis may provide a deeper insight into how these medically important pathogens emerged and evolved from a common ancestor...