Research Topics
Genomes and Genes | Anastassios C PapageorgiouSummaryAffiliation: Turku Centre for Biotechnology Country: Finland Publications
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Detail Information
Publications
Structural basis of poly(3-hydroxybutyrate) hydrolysis by PhaZ7 depolymerase from Paucimonas lemoigneiAnastassios C Papageorgiou
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, BioCity, Turku 20521, Finland
J Mol Biol 382:1184-94. 2008..funiculosum PHB depolymerase have adopted different strategies for effective substrate binding in response to their diverse substrate specificity and the lack of a substrate-binding domain...
The structure of PhaZ7 at atomic (1.2 A) resolution reveals details of the active site and suggests a substrate-binding modeSachin Wakadkar
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, Finland
Acta Crystallogr Sect F Struct Biol Cryst Commun 66:648-54. 2010..The changes were located in surface loops involved in dimer formation, indicating some flexibility of these loops and their possible involvement in polyester binding...
Magnetic properties and structural characterization of iron oxide nanoparticles formed by Streptococcus suis Dpr and four mutantsTeemu Haikarainen
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, Turku, Finland
J Biol Inorg Chem 16:799-807. 2011....
Expression, purification and crystallization of Streptococcus dysgalactiae-derived mitogenAnastassios C Papageorgiou
Turku Centre for Biotechnology, University of Turku, Turku 20521, Finland
Acta Crystallogr Sect F Struct Biol Cryst Commun 62:242-4. 2006..The crystals belong to space group P3/P3(1)/P3(2), with unit-cell parameters a = b = 52.7, c = 62.4 A, gamma = 120 degrees and one molecule in the crystallographic asymmetric unit...
Structural and functional insights into Erwinia carotovora L-asparaginaseAnastassios C Papageorgiou
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, Finland
FEBS J 275:4306-16. 2008..carotovora asparaginase has limited potential as an antileukemic drug, despite its promising low glutaminase activity. Our analysis may be applicable to the therapeutic evaluation of other asparaginases as well...
Iron incorporation in Streptococcus suis Dps-like peroxide resistance protein Dpr requires mobility in the ferroxidase center and leads to the formation of a ferrihydrite-like coreAnni Kauko
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, BioCity, Turku, Finland
J Mol Biol 364:97-109. 2006..Characterization of the two iron cores in Dpr could provide insights into nucleation events and the mechanism of iron core growth in the Dps family of proteins...
Structural basis of the zinc- and terbium-mediated inhibition of ferroxidase activity in Dps ferritin-like proteinsHeli Havukainen
Turku Centre for Biotechnology, University of Turku, Turku 20521, Finland
Protein Sci 17:1513-21. 2008....
Structural characterization and biological implications of di-zinc binding in the ferroxidase center of Streptococcus pyogenes DprTeemu Haikarainen
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, Finland
Biochem Biophys Res Commun 398:361-5. 2010..The results suggest a structural basis for the protection of Streptococcus pyogenes in zinc stress conditions and provide a clear evidence for a di-zinc and di-iron ferroxidase site in Streptococcus pyogenes Dpr protein...
Crystal structure of Streptococcus dysgalactiae-derived mitogen reveals a zinc-binding site and alterations in TcR bindingSusanna Saarinen
Turku Center for Biotechnology, University of Turku and Abo Akademi University, PO Box 123, Tykistokatu 6, BioCity, Turku 20521, Finland
J Mol Biol 373:1089-97. 2007..This observation and the lack of the alpha5 helix suggest alterations in T-cell-receptor binding...
Effect of pH on the structure and stability of Bacillus circulans ssp. alkalophilus phosphoserine aminotransferase: thermodynamic and crystallographic studiesEvangelia G Kapetaniou
Centre of Biotechnology, University of Turku, Turku, Finland
Proteins 63:742-53. 2006....
Structural and thermodynamic characterization of metal ion binding in Streptococcus suis DprTeemu Haikarainen
Turku Center for Biotechnology, University of Turku and Abo Akademi University, Turku 20521, Finland
J Mol Biol 405:448-60. 2011..The results presented here demonstrate the ability of SsDpr to bind various metals as substitutes for iron and will help in better understanding protein-metal interactions in the Dps family of proteins as potential metal nanocontainers...
Dps/Dpr ferritin-like protein: insights into the mechanism of iron incorporation and evidence for a central role in cellular iron homeostasis in Streptococcus suisArto T Pulliainen
Department of Medical Biochemistry and Molecular Biology, University of Turku, Kiinamyllynkatu 10, FI 20520 Turku, Finland
Mol Microbiol 57:1086-100. 2005..The key residues responsible for iron incorporation in S. suis Dpr are well conserved throughout the Dps family. A model for the iron incorporation mechanism of the Dps/Dpr ferritin-like protein is proposed...
Crystal structures of Streptococcus pyogenes Dpr reveal a dodecameric iron-binding protein with a ferroxidase siteTeemu Haikarainen
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, Turku, Finland
J Biol Inorg Chem 15:183-94. 2010..Although the N-terminal pore was found to be similar to that of other Dps-like proteins, the C-terminal pore was found to be blocked by bulky Tyr residues instead of small residues present in other Dps-like proteins...
Structure of Helicobacter pylori L-asparaginase at 1.4 A resolutionPrathusha Dhavala
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, Finland
Acta Crystallogr D Biol Crystallogr 65:1253-61. 2009..coli L-asparaginase than to any other L-asparaginase, including Er. carotovora L-asparaginase, despite the fact that the latter is also characterized by low glutaminase activity...
Enzyme adaptation to alkaline pH: atomic resolution (1.08 A) structure of phosphoserine aminotransferase from Bacillus alcalophilusAnatoly P Dubnovitsky
Turku Centre for Biotechnology, University of Turku, Finland
Protein Sci 14:97-110. 2005..The identified structural features are proposed to be possible factors implicated in the alkaline adaptation of phosphoserine aminotransferase...
Expression, purification and crystallization of Helicobacter pylori L-asparaginasePrathusha Dhavala
Turku Centre for Biotechnology, University of Turku and Abo Akademi, Turku 20521, Finland
Acta Crystallogr Sect F Struct Biol Cryst Commun 64:740-2. 2008..Elucidation of the crystal structure will provide insight into the active site of the enzyme and a better understanding of the structure-activity relationship in L-asparaginases...
Dps-like proteins: structural and functional insights into a versatile protein familyTeemu Haikarainen
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, BioCity, P O Box 123, Turku, 20521, Finland
Cell Mol Life Sci 67:341-51. 2010..A better understanding of their function and mechanism could therefore lead to novel applications in biotechnology and nanotechnology...
Crystal structure of Streptococcus suis Dps-like peroxide resistance protein Dpr: implications for iron incorporationAnni Kauko
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, BioCity, Turku 20521, Finland
J Mol Biol 338:547-58. 2004..The structure of Dpr presented here shows potential local conformational changes that may occur during iron incorporation. A role for the metal-binding site in iron uptake is proposed...
Crystallization and preliminary crystallographic analysis of L-asparaginase from Erwinia carotovoraLinnea E K Wikman
Turku Centre for Biotechnology, University of Turku, Turku 20521, Finland
Acta Crystallograph Sect F Struct Biol Cryst Commun 61:407-9. 2005..A molecular-replacement solution has been found and refinement is currently in progress. The crystal structure may provide leads towards protein-engineering efforts aimed at safer asparaginase administration in leukaemia treatment...
Crystallization and preliminary X-ray analysis of a novel thermoalkalophilic poly(3-hydroxybutyrate) depolymerase (PhaZ7) from Paucimonas lemoigneiEvangelia G Kapetaniou
Turku Centre for Biotechnology, University of Turku, , Turku 20521, Finland
Acta Crystallograph Sect F Struct Biol Cryst Commun 61:479-81. 2005..8, b = 46.5, c = 171.3, beta = 128.9 degrees. A complete data set was collected to 2.75 A resolution at 100 K using synchrotron radiation...
Expression, purification and crystallization of Dpr, a ferritin-like protein from the Gram-positive meningitis-associated bacterium Streptococcus suisSauli Haataja
Department of Medical Biochemistry, University of Turku, Turku 20520, Finland
Acta Crystallogr D Biol Crystallogr 58:1851-3. 2002..3 A resolution was collected using synchrotron radiation. The crystals belong to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 104.3, b = 137.6, c = 142.1 A and 12 molecules in the asymmetric unit...
Crystal structure of a family 45 endoglucanase from Melanocarpus albomyces: mechanistic implications based on the free and cellobiose-bound formsMika Hirvonen
Turku Centre for Biotechnology, University of Turku, P.O. Box 123, Turku 20521, Finland
J Mol Biol 329:403-10. 2003..It is therefore proposed that these alterations may reflect differences in the binding mechanism and catalytic action of the enzyme...
Expression, purification, crystallization and preliminary crystallographic analysis of phosphoserine aminotransferase from Bacillus alcalophilusAnatoly P Dubnovitsky
Turku Centre for Biotechnology, University of Turku and Abo Academi University, PO Box 123, Turku 20521, Finland
Acta Crystallogr D Biol Crystallogr 59:2319-21. 2003..7 and 1.6 A resolution, respectively, at 100 K using synchrotron radiation. Analysis of the structure of B. alcalophilus PSAT may reveal structural features that contribute to enzyme adaptability at high pH values...
Strain relief at the active site of phosphoserine aminotransferase induced by radiation damageAnatoly P Dubnovitsky
Turku Centre for Biotechnology, University of Turku, Finland
Protein Sci 14:1498-507. 2005..7 x 10(6) Ggamma. Our data provide new insights into the enzymatic activation of pyridoxal-5'-phosphate and suggest that special care should be taken while using macromolecular crystallography to study details in strained active sites...
Expression, purification and crystallization of Chaetomium thermophilum Cu,Zn superoxide dismutaseSachin Wakadkar
Turku Centre for Biotechnology, University of Turku and Abo Akademi, Turku 20521, Finland
Acta Crystallogr Sect F Struct Biol Cryst Commun 66:1089-92. 2010..Elucidation of the crystal structure will provide insights into the active site of the enzyme and a better understanding of the structure-activity relationship, assembly and thermal stability of Cu,ZnSODs...
Lower consolute boundaries of the nonionic surfactant C8E5 in aqueous alkali halide solutions: an approach to reproduce the effects of alkali halides on the cloud-point temperatureKristian Weckström
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, P O Box 123, FIN 20521 Turku, Finland
J Colloid Interface Sci 310:151-62. 2007..In this approach use is made of the known behaviour of the electrolytes at the air/water surface and the virial expansion, to account for the initial salting-out/-in effect and the variation of the effect with electrolyte molality...
Crystallization and preliminary crystallographic analysis of a family 45 endoglucanase from the thermophilic fungus Melanocarpus albomycesMika Hirvonen
Turku Centre for Biotechnology, University of Turku and Abo Akademi University, PO Box 123, Turku 20521, Finland
Acta Crystallogr D Biol Crystallogr 58:336-8. 2002..Preliminary crystallographic analysis showed that the crystals belong to the tetragonal space group P4(1)2(1)2/P4(3)2(1)2, with unit-cell parameters a = 47.3, b = 47.3, c = 177.3 A and one molecule per asymmetric unit...
DNA topoisomerase I is a cofactor for c-Jun in the regulation of epidermal growth factor receptor expression and cancer cell proliferationAntoine Mialon
Centre for Biotechnology, University of Turku and Abo Akademi University, Tykistökatu 6B, 20520 Turku, Finland
Mol Cell Biol 25:5040-51. 2005..In addition, the results of the present study strongly suggest that inhibition of EGFR expression is a novel mechanism by which topotecan inhibits cell proliferation in cancer therapy...
Cloning, expression, and characterization of the superantigen streptococcal pyrogenic exotoxin G from Streptococcus dysgalactiaeJizi Zhao
Department of Infectious Diseases, Research Institute, International Medical Center of Japan, 1 21 1 Toyama, Shinjuku ku, Tokyo 162 8655, Japan
Infect Immun 75:1721-9. 2007..Bovine serum showed reactivity to the rSPEGG proteins. These results indicated that SPEGGs have properties as superantigens, and it is likely that SPEGGs play a pathogenic role in animals...
The crystal structure of human angiogenin in complex with an antitumor neutralizing antibodyGayatri B Chavali
Department of Biology and Biochemistry, University of Bath, Claverton Down, BA2 7AY, Bath, United Kingdom
Structure 11:875-85. 2003..The ANG-Fab complex structure should be invaluable for designing maximally humanized versions of 26-2F for potential clinical use...
Identification of a secondary zinc-binding site in staphylococcal enterotoxin C2. Implications for superantigen recognitionAnastassios C Papageorgiou
Department of Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK
J Biol Chem 279:1297-303. 2004..SEC2.MHC complex are considered, and the possibility that zinc may regulate the activity of SEC2 as a toxin facilitating different T cell responses is discussed...
Deglycosylation, processing and crystallization of human testis angiotensin-converting enzymeKerry Gordon
Division of Medical Biochemistry, Faculty of Health Sciences, University of Cape Town, Observatory 7925, South Africa
Biochem J 371:437-42. 2003..Thus underglycosylated human tACE mutants, lacking O-linked oligosaccharides and most N-linked oligosaccharides or with only simple N-linked oligosaccharides attached throughout the molecule, are suitable for X-ray diffraction studies...
Crystal structures of oligomeric forms of the IP-10/CXCL10 chemokineG Jawahar Swaminathan
Department of Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom
Structure 11:521-32. 2003..We propose that the tetrameric structures may represent species promoted by the binding of glycosaminoglycans. The binding sites for several IP-10-neutralizing mAbs have also been mapped...
Structural and functional role of threonine 112 in a superantigen Staphylococcus aureus enterotoxin BMatthew D Baker
Department of Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom
J Biol Chem 277:2756-62. 2002..We present a detailed comparison of the mutant structure determined at 2.0 A with the previously reported native SEB and SEB-TCR V(beta) complex structures...
