Jüri Reimand

Summary

Affiliation: University of Tartu
Country: Estonia

Publications

  1. ncbi Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development
    Nathalie Billon
    Universite de Nice Sophia Antipolis, Institut Biologie du Développement et Cancer, CNRS UMR 6543, Faculté de Médecine Pasteur, 28 Avenue de Valombrose, 06108 Nice Cedex 2, France
    Genome Biol 11:R80. 2010
  2. ncbi Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
    Jüri Reimand
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK
    Nucleic Acids Res 38:4768-77. 2010
  3. ncbi g:Profiler--a web server for functional interpretation of gene lists (2011 update)
    Jüri Reimand
    University of Tartu, Institute of Computer Science, Tartu, Estonia
    Nucleic Acids Res 39:W307-15. 2011
  4. ncbi VisHiC--hierarchical functional enrichment analysis of microarray data
    Darya Krushevskaya
    Institute of Computer Science, University of Tartu, Liivi 2, 50409 Tartu, Estonian
    Nucleic Acids Res 37:W587-92. 2009
  5. ncbi GraphWeb: mining heterogeneous biological networks for gene modules with functional significance
    Jüri Reimand
    University of Tartu, Institute of Computer Science, Liivi 2, Tartu, Estonia
    Nucleic Acids Res 36:W452-9. 2008
  6. ncbi Ranking genes by their co-expression to subsets of pathway members
    Priit Adler
    Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia
    Ann N Y Acad Sci 1158:1-13. 2009
  7. ncbi g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments
    Jüri Reimand
    Institute of Computer Science, University of Tartu, Liivi 2, 50409 Tartu, Estonia
    Nucleic Acids Res 35:W193-200. 2007
  8. ncbi Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods
    Priit Adler
    Institute of Molecular and Cell Biology, Riia 23, 51010 Tartu, Estonia
    Genome Biol 10:R139. 2009
  9. ncbi Relicensing of transcriptionally inactivated replication origins in budding yeast
    Marko Lõoke
    Institute of Molecular and Cell Biology, University of Tartu, Tartu 51010, Estonia
    J Biol Chem 285:40004-11. 2010

Collaborators

Detail Information

Publications9

  1. ncbi Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development
    Nathalie Billon
    Universite de Nice Sophia Antipolis, Institut Biologie du Développement et Cancer, CNRS UMR 6543, Faculté de Médecine Pasteur, 28 Avenue de Valombrose, 06108 Nice Cedex 2, France
    Genome Biol 11:R80. 2010
    ..While major progress has been made in defining the molecular networks that control adipocyte terminal differentiation, the early steps of adipocyte development and the embryonic origin of this lineage remain largely unknown...
  2. ncbi Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets
    Jüri Reimand
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK
    Nucleic Acids Res 38:4768-77. 2010
    ..compendium. The dataset is available from ArrayExpress (accession: E-MTAB-109) and it will be invaluable to any scientist interested in the yeast transcriptional regulatory system...
  3. ncbi g:Profiler--a web server for functional interpretation of gene lists (2011 update)
    Jüri Reimand
    University of Tartu, Institute of Computer Science, Tartu, Estonia
    Nucleic Acids Res 39:W307-15. 2011
    ..g:Profiler is a regularly updated resource that is available for a wide range of species, including mammals, plants, fungi and insects...
  4. ncbi VisHiC--hierarchical functional enrichment analysis of microarray data
    Darya Krushevskaya
    Institute of Computer Science, University of Tartu, Liivi 2, 50409 Tartu, Estonian
    Nucleic Acids Res 37:W587-92. 2009
    ..VisHiC is freely available at http://biit.cs.ut.ee/vishic...
  5. ncbi GraphWeb: mining heterogeneous biological networks for gene modules with functional significance
    Jüri Reimand
    University of Tartu, Institute of Computer Science, Liivi 2, Tartu, Estonia
    Nucleic Acids Res 36:W452-9. 2008
    ..The GraphWeb is available at http://biit.cs.ut.ee/graphweb/...
  6. ncbi Ranking genes by their co-expression to subsets of pathway members
    Priit Adler
    Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia
    Ann N Y Acad Sci 1158:1-13. 2009
    ..The developed computational network has immediate applications in detecting dubious pathway members and predicting novel member candidates...
  7. ncbi g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments
    Jüri Reimand
    Institute of Computer Science, University of Tartu, Liivi 2, 50409 Tartu, Estonia
    Nucleic Acids Res 35:W193-200. 2007
    ..g:Profiler supports 31 different species, and underlying data is updated regularly from sources like the Ensembl database. Bioinformatics communities wishing to integrate with g:Profiler can use alternative simple textual outputs...
  8. ncbi Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods
    Priit Adler
    Institute of Molecular and Cell Biology, Riia 23, 51010 Tartu, Estonia
    Genome Biol 10:R139. 2009
    ..Unique features of MEM include automatic detection, characterization and visualization of datasets that includes the strongest coexpression patterns. MEM is freely available at http://biit.cs.ut.ee/mem/...
  9. ncbi Relicensing of transcriptionally inactivated replication origins in budding yeast
    Marko Lõoke
    Institute of Molecular and Cell Biology, University of Tartu, Tartu 51010, Estonia
    J Biol Chem 285:40004-11. 2010
    ..We propose that reloading of pre-RC components in G(1) might be utilized for the maintenance of sufficient number of competent origins for efficient initiation of DNA replication in S phase...