Ebbe Sloth Andersen

Summary

Affiliation: University of Aarhus
Country: Denmark

Publications

  1. ncbi Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
    Zsuzsanna Sükösd
    Interdisciplinary Nanoscience Center, Aarhus University, Denmark
    BMC Bioinformatics 12:103. 2011
  2. ncbi Prediction and design of DNA and RNA structures
    Ebbe Sloth Andersen
    Centre for DNA Nanotechnology, Interdisciplinary Nanoscience Center, Department of Molecular Biology, Aarhus University, C F Møllers Allé 3, Aarhus C, Denmark
    N Biotechnol 27:184-93. 2010
  3. ncbi Functional patterning of DNA origami by parallel enzymatic modification
    Kasper Jahn
    Danish National Research Foundation Center for DNA Nanotechnology at Interdisciplinary Nanoscience Center iNANO, Aarhus University, DK 8000 Aarhus, Denmark
    Bioconjug Chem 22:819-23. 2011
  4. ncbi The tmRDB and SRPDB resources
    Ebbe Sloth Andersen
    Department of Molecular Biology, University of Aarhus, C F Moellers Alle, Building 139, 8000 Aarhus, Denmark
    Nucleic Acids Res 34:D163-8. 2006
  5. ncbi Single molecule microscopy methods for the study of DNA origami structures
    Victoria Birkedal
    iNANO Center, Aarhus University, 8000 Arhus C, Denmark
    Microsc Res Tech 74:688-98. 2011
  6. ncbi RNA interactions in the 5' region of the HIV-1 genome
    Christian Kroun Damgaard
    Department of Molecular Biology, University of Aarhus, , Building 130, DK-8000 C, Arhus, Denmark
    J Mol Biol 336:369-79. 2004
  7. ncbi Site-specific chemical labeling of long RNA molecules
    Kasper Jahn
    Danish National Research Foundation, Center for DNA Nanotechnology at Interdisciplinary Nanoscience Center, Aarhus University, DK 8000 Aarhus, Denmark
    Bioconjug Chem 22:95-100. 2011

Collaborators

Detail Information

Publications7

  1. ncbi Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
    Zsuzsanna Sükösd
    Interdisciplinary Nanoscience Center, Aarhus University, Denmark
    BMC Bioinformatics 12:103. 2011
    ..Here we present PPfold, a multithreaded version of pfold, which is capable of predicting the structure of large RNA alignments accurately on practical timescales...
  2. ncbi Prediction and design of DNA and RNA structures
    Ebbe Sloth Andersen
    Centre for DNA Nanotechnology, Interdisciplinary Nanoscience Center, Department of Molecular Biology, Aarhus University, C F Møllers Allé 3, Aarhus C, Denmark
    N Biotechnol 27:184-93. 2010
    ..The tools are listed by input and output to provide a user perspective and an extended tool table is made available at http://www.cdna.dk/tools/...
  3. ncbi Functional patterning of DNA origami by parallel enzymatic modification
    Kasper Jahn
    Danish National Research Foundation Center for DNA Nanotechnology at Interdisciplinary Nanoscience Center iNANO, Aarhus University, DK 8000 Aarhus, Denmark
    Bioconjug Chem 22:819-23. 2011
    ..The results show a very high yield of oligonucleotide labeling and incorporation in the DNA origami. This method expands the toolbox for constructing several different modified DNA origami from the same set of staple strands...
  4. ncbi The tmRDB and SRPDB resources
    Ebbe Sloth Andersen
    Department of Molecular Biology, University of Aarhus, C F Moellers Alle, Building 139, 8000 Aarhus, Denmark
    Nucleic Acids Res 34:D163-8. 2006
    ..All alignments can be easily examined using a new exploratory browser. The databases provide links to high-resolution structures and serve as depositories for structures obtained by molecular modeling...
  5. ncbi Single molecule microscopy methods for the study of DNA origami structures
    Victoria Birkedal
    iNANO Center, Aarhus University, 8000 Arhus C, Denmark
    Microsc Res Tech 74:688-98. 2011
    ..Its size and structure were studied by AFM and cryo-EM, while the lid opening, which can be controlled by the addition of oligonucleotide keys, was recorded by Förster/fluorescence resonance energy transfer (FRET) spectroscopy...
  6. ncbi RNA interactions in the 5' region of the HIV-1 genome
    Christian Kroun Damgaard
    Department of Molecular Biology, University of Aarhus, , Building 130, DK-8000 C, Arhus, Denmark
    J Mol Biol 336:369-79. 2004
    ..To obtain information about tertiary interactions we applied an intramolecular UV-crosslinking strategy and identified a novel tertiary interaction within the PBS hairpin structure...
  7. ncbi Site-specific chemical labeling of long RNA molecules
    Kasper Jahn
    Danish National Research Foundation, Center for DNA Nanotechnology at Interdisciplinary Nanoscience Center, Aarhus University, DK 8000 Aarhus, Denmark
    Bioconjug Chem 22:95-100. 2011
    ..The method is rapid and allows site specific labeling of both in vitro and in vivo synthesized RNA with a broad range of functional groups...