Hanni Willenbrock

Summary

Affiliation: Center for Biological Sequence Analysis
Country: Denmark

Publications

  1. ncbi Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray
    Hanni Willenbrock
    Center for Biological Sequence Analysis, Technical University of Denmark, 2800 Lyngby, Denmark
    Genome Biol 8:R267. 2007
  2. ncbi Prediction of highly expressed genes in microbes based on chromatin accessibility
    Hanni Willenbrock
    Center for Biological Sequence Analysis, BioCentrum, Technical University of Denmark, DK 2800 Kgs, Lyngby, Denmark
    BMC Mol Biol 8:11. 2007
  3. ncbi Design of a seven-genome Escherichia coli microarray for comparative genomic profiling
    Hanni Willenbrock
    Center for Biological Sequence Analysis, Technical University of Denmark, Building 301, DK-2800 Kgs. Lyngby, Denmark
    J Bacteriol 188:7713-21. 2006
  4. ncbi Genome update: sigma factors in 240 bacterial genomes
    Kristoffer Kill
    Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs Lyngby, Denmark
    Microbiology 151:3147-50. 2005
  5. ncbi Genome update: distribution of two-component transduction systems in 250 bacterial genomes
    Kristoffer Kiil
    Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs, Lyngby, Denmark
    Microbiology 151:3447-52. 2005
  6. ncbi Genome update: base skews in 200+ bacterial chromosomes
    Peter F Hallin
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark
    Microbiology 151:633-7. 2005
  7. ncbi Functional Associations by Response Overlap (FARO), a functional genomics approach matching gene expression phenotypes
    Henrik Bjørn Nielsen
    Center for Biological Sequence Analysis, BioCentrum, Technical University of Denmark, Kongens Lyngby, Denmark
    PLoS ONE 2:e676. 2007
  8. ncbi An environmental signature for 323 microbial genomes based on codon adaptation indices
    Hanni Willenbrock
    Center for Biological Sequence Analysis, BioCentrum-DTU, The Technical University of Denmark, DK-2800 Lyngby, Denmark
    Genome Biol 7:R114. 2006
  9. ncbi Genome update: 2D clustering of bacterial genomes
    Hanni Willenbrock
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark
    Microbiology 151:333-6. 2005
  10. ncbi Chromatin architecture and gene expression in Escherichia coli
    Hanni Willenbrock
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, Technical University of Denmark, DK-28OO Kgs, Lyngby, Denmark
    Genome Biol 5:252. 2004

Collaborators

Detail Information

Publications14

  1. ncbi Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray
    Hanni Willenbrock
    Center for Biological Sequence Analysis, Technical University of Denmark, 2800 Lyngby, Denmark
    Genome Biol 8:R267. 2007
    ....
  2. ncbi Prediction of highly expressed genes in microbes based on chromatin accessibility
    Hanni Willenbrock
    Center for Biological Sequence Analysis, BioCentrum, Technical University of Denmark, DK 2800 Kgs, Lyngby, Denmark
    BMC Mol Biol 8:11. 2007
    ..Moreover, position preference is examined further in 328 sequenced microbial genomes...
  3. ncbi Design of a seven-genome Escherichia coli microarray for comparative genomic profiling
    Hanni Willenbrock
    Center for Biological Sequence Analysis, Technical University of Denmark, Building 301, DK-2800 Kgs. Lyngby, Denmark
    J Bacteriol 188:7713-21. 2006
    ..8 and 97.7% of queried chromosomal genes for the two control strains. Finally, we demonstrate that use of spatial information, in terms of the physical chromosomal locations of probes, improves the analysis...
  4. ncbi Genome update: sigma factors in 240 bacterial genomes
    Kristoffer Kill
    Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs Lyngby, Denmark
    Microbiology 151:3147-50. 2005
  5. ncbi Genome update: distribution of two-component transduction systems in 250 bacterial genomes
    Kristoffer Kiil
    Center for Biological Sequence Analysis, BioCentrum-DTU, Building 208, The Technical University of Denmark, DK-2800 Kgs, Lyngby, Denmark
    Microbiology 151:3447-52. 2005
  6. ncbi Genome update: base skews in 200+ bacterial chromosomes
    Peter F Hallin
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark
    Microbiology 151:633-7. 2005
  7. ncbi Functional Associations by Response Overlap (FARO), a functional genomics approach matching gene expression phenotypes
    Henrik Bjørn Nielsen
    Center for Biological Sequence Analysis, BioCentrum, Technical University of Denmark, Kongens Lyngby, Denmark
    PLoS ONE 2:e676. 2007
    ..Finally, our results indicate that FARO is more powerful in associating mutants in common pathways than existing methods such as co-expression analysis...
  8. ncbi An environmental signature for 323 microbial genomes based on codon adaptation indices
    Hanni Willenbrock
    Center for Biological Sequence Analysis, BioCentrum-DTU, The Technical University of Denmark, DK-2800 Lyngby, Denmark
    Genome Biol 7:R114. 2006
    ..CONCLUSION: The results and the approach described here may be used to acquire new knowledge regarding species lifestyle and to elucidate relationships between organisms that are far apart evolutionarily...
  9. ncbi Genome update: 2D clustering of bacterial genomes
    Hanni Willenbrock
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, The Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark
    Microbiology 151:333-6. 2005
  10. ncbi Chromatin architecture and gene expression in Escherichia coli
    Hanni Willenbrock
    Center for Biological Sequence Analysis, Department of Biotechnology, Building 208, Technical University of Denmark, DK-28OO Kgs, Lyngby, Denmark
    Genome Biol 5:252. 2004
    ..Two recent genome-scale analyses underscore the importance of DNA topology and chromatin structure in regulating transcription in Escherichia coli...
  11. ncbi A comparison study: applying segmentation to array CGH data for downstream analyses
    Hanni Willenbrock
    Center for Biological Sequence Analysis, Department of Biotechnology, Technical University of Denmark, Kgs. Lyngby
    Bioinformatics 21:4084-91. 2005
    ..AVAILABILITY: http://www.bioconductor.org..
  12. ncbi Prediction of lipoprotein signal peptides in Gram-negative bacteria
    Agnieszka S Juncker
    Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby 2800, Denmark
    Protein Sci 12:1652-62. 2003
    ..A neural network-based predictor was developed for comparison, and it gave very similar results. LipoP is available as a Web server at www.cbs.dtu.dk/services/LipoP/...
  13. ncbi Improving comparability between microarray probe signals by thermodynamic intensity correction
    Georg M Bruun
    Niels Bohr Institute, Blegdamsvej 17, Copenhagen, Denmark
    Nucleic Acids Res 35:e48. 2007
    ..The model improves the correct calls from 85 to 95% relative to raw intensity measures. The model thus makes applications which depend on comparisons between probes aimed at different sections of the same target more reliable...
  14. ncbi Global features of the Alcanivorax borkumensis SK2 genome
    Oleg N Reva
    Klinische Forschergruppe, OE6711, Medizinische Hochschule Hannover, Carl Neuberg Strasse 1, D 30625 Hannover, Germany
    Environ Microbiol 10:614-25. 2008
    ....