Xuan Xiao

Summary

Country: China

Publications

  1. ncbi iNR-PhysChem: a sequence-based predictor for identifying nuclear receptors and their subfamilies via physical-chemical property matrix
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen, China
    PLoS ONE 7:e30869. 2012
  2. ncbi iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites
    Zhi Cheng Wu
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 333046, China
    Mol Biosyst 7:3287-97. 2011
  3. ncbi A multi-label classifier for predicting the subcellular localization of gram-negative bacterial proteins with both single and multiple sites
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen, China
    PLoS ONE 6:e20592. 2011
  4. ncbi Using adaptive K-nearest neighbor algorithm and cellular automata images to predicting G-Protein-Coupled Receptor classes
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jingdezhen, China
    Interdiscip Sci 2:180-4. 2010
  5. ncbi Quat-2L: a web-server for predicting protein quaternary structural attributes
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen, 333001, China
    Mol Divers 15:149-55. 2011
  6. ncbi GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 33300, China
    J Comput Chem 30:1414-23. 2009
  7. ncbi Application of protein grey incidence degree measure to predict protein quaternary structural types
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, 333001, Jing De Zhen, China
    Amino Acids 37:741-9. 2009
  8. ncbi Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 33300, China
    J Theor Biol 254:691-6. 2008
  9. ncbi Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 333000, China
    J Comput Chem 29:2018-24. 2008
  10. ncbi Digital coding of amino acids based on hydrophobic index
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 33300, China
    Protein Pept Lett 14:871-5. 2007

Collaborators

Detail Information

Publications19

  1. ncbi iNR-PhysChem: a sequence-based predictor for identifying nuclear receptors and their subfamilies via physical-chemical property matrix
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen, China
    PLoS ONE 7:e30869. 2012
    ..It is anticipated that iNR-PhysChem may become a useful high throughput tool for both basic research and drug design...
  2. ncbi iLoc-Plant: a multi-label classifier for predicting the subcellular localization of plant proteins with both single and multiple sites
    Zhi Cheng Wu
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 333046, China
    Mol Biosyst 7:3287-97. 2011
    ..It is anticipated that iLoc-Plant may become a useful bioinformatics tool for Molecular Cell Biology, Proteomics, Systems Biology, and Drug Development...
  3. ncbi A multi-label classifier for predicting the subcellular localization of gram-negative bacterial proteins with both single and multiple sites
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen, China
    PLoS ONE 6:e20592. 2011
    ..It is anticipated that iLoc-Gneg may become a useful high throughput tool for Molecular Cell Biology, Proteomics, System Biology, and Drug Development...
  4. ncbi Using adaptive K-nearest neighbor algorithm and cellular automata images to predicting G-Protein-Coupled Receptor classes
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jingdezhen, China
    Interdiscip Sci 2:180-4. 2010
    ....
  5. ncbi Quat-2L: a web-server for predicting protein quaternary structural attributes
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen, 333001, China
    Mol Divers 15:149-55. 2011
    ..As a web-server, Quat-2L is freely accessible to the public via http://icpr.jci.jx.cn/bioinfo/Quat-2L, where one can get 2-level results in about 15 s...
  6. ncbi GPCR-CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 33300, China
    J Comput Chem 30:1414-23. 2009
    ..GPCR-CA is freely accessible at http://218.65.61.89:8080/bioinfo/GPCR-CA, by which one can get the desired two-layer results for a query protein sequence within about 20 seconds...
  7. ncbi Application of protein grey incidence degree measure to predict protein quaternary structural types
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, 333001, Jing De Zhen, China
    Amino Acids 37:741-9. 2009
    ..It is anticipated that the grey incidence degree can be also used to predict many other protein attributes, such as subcellular localization, membrane protein type, enzyme functional class, GPCR type, protease type, among many others...
  8. ncbi Predicting protein structural classes with pseudo amino acid composition: an approach using geometric moments of cellular automaton image
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 33300, China
    J Theor Biol 254:691-6. 2008
    ....
  9. ncbi Using grey dynamic modeling and pseudo amino acid composition to predict protein structural classes
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 333000, China
    J Comput Chem 29:2018-24. 2008
    ....
  10. ncbi Digital coding of amino acids based on hydrophobic index
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 33300, China
    Protein Pept Lett 14:871-5. 2007
    ..Such a "bridge" will make it possible to apply all the existing powerful methods in the signal processing area to analysis of the amino acid sequences...
  11. ncbi GPCR-GIA: a web-server for identifying G-protein coupled receptors and their families with grey incidence analysis
    Wei Zhong Lin
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 333001, China
    Protein Eng Des Sel 22:699-705. 2009
    ..Generally speaking, one can get the desired two-level results in around 10 s for a query protein sequence of 300-400 amino acids; the longer the sequence is, the more time that is needed...
  12. ncbi NR-2L: a two-level predictor for identifying nuclear receptor subfamilies based on sequence-derived features
    Pu Wang
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen, China
    PLoS ONE 6:e23505. 2011
    ..The less the number of query proteins is, the shorter the time will usually be. All the program codes for NR-2L are available for non-commercial purpose upon request...
  13. ncbi 2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
    Zhi Cheng Wu
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 333046, China
    J Theor Biol 267:29-34. 2010
    ..jci.jx.cn/bioinfo/pplot/2D-MH, by which one can easily generate the two-dimensional graphs for any number of protein sequences and compare the evolutionary distances between them...
  14. ncbi GPCR-2L: predicting G protein-coupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen 333403, China
    Mol Biosyst 7:911-9. 2011
    ..It is anticipated that GPCR-2L may become a useful tool for both basic research and drug development in the areas related to GPCRs...
  15. ncbi iLoc-Virus: a multi-label learning classifier for identifying the subcellular localization of virus proteins with both single and multiple sites
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen, China
    J Theor Biol 284:42-51. 2011
    ..It is anticipated that iLoc-Virus may become a useful high throughput tool for both basic research and drug development...
  16. ncbi iLoc-Gpos: a multi-layer classifier for predicting the subcellular localization of singleplex and multiplex Gram-positive bacterial proteins
    Zhi Cheng Wu
    Computer Department, Jing De Zhen Ceramic Institute, Jing De Zhen, China
    Protein Pept Lett 19:4-14. 2012
    ..Furthermore, for the user ? s convenience, the iLoc-Gpos web-server also has the function to accept the batch job submission, which is not available in the existing version of Gpos-mPLoc web-server...
  17. ncbi Cellular automata and its applications in protein bioinformatics
    Xuan Xiao
    Computer Department, Jing De Zhen Ceramic Institute, China
    Curr Protein Pept Sci 12:508-19. 2011
    ..Owing to its impressive power, intuitiveness and relative simplicity, the CA approach has great potential for use as a tool for bioinformatics...
  18. ncbi Using pseudo amino acid composition to predict protein structural classes: approached with complexity measure factor
    Xuan Xiao
    Institute of Information, Donghua University, Shanghai 200051, People's Republic of China
    J Comput Chem 27:478-82. 2006
    ....
  19. ncbi A probability cellular automaton model for hepatitis B viral infections
    Xuan Xiao
    Institute of Information, Donghua University, Shanghai 200051, China
    Biochem Biophys Res Commun 342:605-10. 2006
    ..It is anticipated that the Cellular Automaton model may be extended to serve as a useful vehicle for studying, among many other complicated dynamic biological systems, various persistent infections with replicating parasites...