Cizhong Jiang

Summary

Affiliation: Tongji University
Country: China

Publications

  1. ncbi A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
    Cizhong Jiang
    Department of Biochemistry and Molecular Biology, Center for Eukaryotic Gene Regulation, 456 North Frear Laboratory, The Pennsylvania State University, University Park, PA 16802, USA
    Genome Biol 10:R109. 2009
  2. ncbi A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
    Travis N Mavrich
    Center for Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
    Genome Res 18:1073-83. 2008
  3. ncbi A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces
    Bryan J Venters
    Center for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA
    Mol Cell 41:480-92. 2011
  4. ncbi Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome
    R Thomas Koerber
    Center for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA
    Mol Cell 35:889-902. 2009
  5. ncbi Nucleosome positioning and gene regulation: advances through genomics
    Cizhong Jiang
    Center for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA
    Nat Rev Genet 10:161-72. 2009
  6. ncbi Nucleosome organization in the Drosophila genome
    Travis N Mavrich
    Center for Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
    Nature 453:358-62. 2008
  7. ncbi GeneTrack--a genomic data processing and visualization framework
    Istvan Albert
    Huck Institutes for the Life Sciences, Pennsylvania State University, University Park, Pennsylvania, 16802, USA
    Bioinformatics 24:1305-6. 2008

Collaborators

  • Ji Qi
  • Shinichiro Wachi
  • Stephan C Schuster
  • Robert L Glaser
  • B Franklin Pugh
  • Travis N Mavrich
  • Bryan J Venters
  • Istvan Albert
  • R Thomas Koerber
  • Lynn P Tomsho
  • Ilya P Ioshikhes
  • Barbara E Andersen
  • Andrew J Sinnamon
  • Priyanka Jain
  • Christine Hemeryck-Walsh
  • Noah S Rolleri
  • Peony Jena
  • Ho Sung Rhee
  • David S Gilmour
  • Xiaoyong Li
  • Sara J Zanton

Detail Information

Publications7

  1. ncbi A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
    Cizhong Jiang
    Department of Biochemistry and Molecular Biology, Center for Eukaryotic Gene Regulation, 456 North Frear Laboratory, The Pennsylvania State University, University Park, PA 16802, USA
    Genome Biol 10:R109. 2009
    ..Data downloads, reference position assignment software, queries, and a visualization browser are available online http://atlas.bx.psu.edu/...
  2. ncbi A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
    Travis N Mavrich
    Center for Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
    Genome Res 18:1073-83. 2008
    ..3' NFRs may be important for transcription termination and anti-sense initiation. We present a high-resolution genome-wide map of TFIIB locations that implicates 3' NFRs in gene looping...
  3. ncbi A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces
    Bryan J Venters
    Center for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA
    Mol Cell 41:480-92. 2011
    ....
  4. ncbi Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome
    R Thomas Koerber
    Center for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA
    Mol Cell 35:889-902. 2009
    ..These findings suggest that nucleosomes around promoter regions have position-specific functions and that some gene regulators have position-specific nucleosomal interactions...
  5. ncbi Nucleosome positioning and gene regulation: advances through genomics
    Cizhong Jiang
    Center for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA
    Nat Rev Genet 10:161-72. 2009
    ..A detailed picture is starting to emerge of how diverse factors, including underlying DNA sequences and chromatin remodelling complexes, influence nucleosome positioning...
  6. ncbi Nucleosome organization in the Drosophila genome
    Travis N Mavrich
    Center for Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
    Nature 453:358-62. 2008
    ..At thousands of genes, RNA polymerase II engages the +1 nucleosome and pauses. How the transcription initiation machinery contends with the +1 nucleosome seems to be fundamentally different across major eukaryotic lines...
  7. ncbi GeneTrack--a genomic data processing and visualization framework
    Istvan Albert
    Huck Institutes for the Life Sciences, Pennsylvania State University, University Park, Pennsylvania, 16802, USA
    Bioinformatics 24:1305-6. 2008
    ..Our software is freely available via the Google Project Hosting environment at http://genetrack.googlecode.com..