Jun Wang

Summary

Affiliation: Chinese Academy of Sciences
Country: China

Publications

  1. ncbi Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture
    Lei Li
    Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA
    Genome Biol 6:R52. 2005
  2. ncbi Neo-sex chromosomes in the black muntjac recapitulate incipient evolution of mammalian sex chromosomes
    Qi Zhou
    CAS Max Planck Junior Research Group, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, People s Republic of China
    Genome Biol 9:R98. 2008
  3. ncbi Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
    Xi Chen
    Jiangsu Diabetes Center, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Hankou Road, Nanjing, Jiangsu 210093, PR China
    Genome Biol 10:R78. 2009
  4. ncbi Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
    Jan Gorodkin
    Division of Genetics and Bioinformatics, IBHV, Grønnegårdsvej 3, The Royal Veterinary and Agricultural University, Frederiksberg C, Denmark
    Genome Biol 8:R45. 2007
  5. ncbi Haplotype frequencies in a sub-region of chromosome 19q13.3, related to risk and prognosis of cancer, differ dramatically between ethnic groups
    Mikkel H Schierup
    Institute of Human Genetics, University of Aarhus, DK 8000 Aarhus C, Denmark
    BMC Med Genet 10:20. 2009
  6. ncbi Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    Rasmus Wernersson
    Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark
    BMC Genomics 6:70. 2005
  7. ncbi Gene conversion in the rice genome
    Shuqing Xu
    Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing Proteomics Institute, Beijing 101300, China
    BMC Genomics 9:93. 2008
  8. ncbi Identification and characterization of insect-specific proteins by genome data analysis
    Guojie Zhang
    State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology Chinese Academy of Sciences, Haidian Beijing 100080, China
    BMC Genomics 8:93. 2007
  9. ncbi Genetic diversity, molecular phylogeny and selection evidence of the silkworm mitochondria implicated by complete resequencing of 41 genomes
    Dong Li
    The Key Sericultural Laboratory of Agricultural Ministry, College of Biotechnology, Southwest University, Chongqing 400715, China
    BMC Evol Biol 10:81. 2010
  10. ncbi Estimation of allele frequency and association mapping using next-generation sequencing data
    Su Yeon Kim
    Departments of Integrative Biology and Statistics, UC Berkeley, Berkeley, CA 94720, USA
    BMC Bioinformatics 12:231. 2011

Collaborators

  • Jun Yu
  • Jianguo Zhang
  • Jun Li
  • Yong Zhang
  • Gane Ka Shu Wong
  • Wen Wang
  • Guojie Zhang
  • Jingui Zhu
  • Wei Tian
  • Ram Samudrala
  • Wei Lin
  • Xiaoling Wang
  • Wei Tong
  • Rasmus Nielsen
  • Li Li
  • Ruiqiang Li
  • Huanming Yang
  • Yingrui Li
  • Karsten Kristiansen
  • Xiuqing Zhang
  • Songgang Li
  • Lars Bolund
  • Deyin Hou
  • Xiaodong Fang
  • Zhaokun Luan
  • Heng Li
  • Geng Tian
  • Junjie Qin
  • Yan Zhou
  • Hongmei Zhu
  • Changwei Zhao
  • Xiaojing Ren
  • Songnian Hu
  • Zuogang Peng
  • Xun Xu
  • Wei Dong
  • Peixiang Ni
  • Hancheng Zheng
  • Wubin Qian
  • Yang Zheng
  • Huiqing Liang
  • Huisong Zheng
  • Chang Yu
  • Qibin Li
  • Yiran Guo
  • Shengting Li
  • Mikkel H Schierup
  • Yongwu Hu
  • Jing Xu
  • Søren Brunak
  • Jan Gorodkin
  • Rasmus Wernersson
  • Ximiao He
  • Jia Ye
  • Wei Li
  • Mao sheng Chen
  • Xu Yang
  • Su Yeon Kim
  • Jiabin Tang
  • Shifeng Cheng
  • Tao Jiang
  • Xiaosen Guo
  • Torben Hansen
  • Oluf Pedersen
  • Runmao Lin
  • Qinghui Zhang
  • Nan Qin
  • Xin Jin
  • Xin Yi
  • Gao Shan
  • Ning Li
  • Dongfang Li
  • Honglong Wu
  • Zhongbin Shi
  • Xiao Liu
  • Junming Xu
  • Ruibang Luo
  • Guangyu Zhou
  • Hongzhi Cao
  • Dong Li
  • Jue Ruan
  • Min Jian
  • Jianjun Cao
  • Xiaoli Ren
  • Feng Tian
  • Xiangcheng Sun
  • Bo Li
  • Bo Wang
  • Jing Cai
  • Yuanyuan Ren

Detail Information

Publications77

  1. ncbi Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture
    Lei Li
    Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA
    Genome Biol 6:R52. 2005
    ..Experimental evaluation of these gene models and identification of new models will facilitate rice genome annotation and the application of this knowledge to other more complex cereal genomes...
  2. ncbi Neo-sex chromosomes in the black muntjac recapitulate incipient evolution of mammalian sex chromosomes
    Qi Zhou
    CAS Max Planck Junior Research Group, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, People s Republic of China
    Genome Biol 9:R98. 2008
    ..The regular mammalian X and Y chromosomes diverged from each other at least 166 to 148 million years ago, leaving few traces of their early evolution, including degeneration of the Y chromosome and evolution of dosage compensation...
  3. ncbi Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
    Xi Chen
    Jiangsu Diabetes Center, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Hankou Road, Nanjing, Jiangsu 210093, PR China
    Genome Biol 10:R78. 2009
    ..While the number of known human and murine miRNAs is continuously increasing, information regarding miRNAs from other species such as amphioxus remains limited...
  4. ncbi Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
    Jan Gorodkin
    Division of Genetics and Bioinformatics, IBHV, Grønnegårdsvej 3, The Royal Veterinary and Agricultural University, Frederiksberg C, Denmark
    Genome Biol 8:R45. 2007
    ..The Sino-Danish ESTs were generated from one normalized and 97 non-normalized cDNA libraries representing 35 different tissues and three developmental stages...
  5. ncbi Haplotype frequencies in a sub-region of chromosome 19q13.3, related to risk and prognosis of cancer, differ dramatically between ethnic groups
    Mikkel H Schierup
    Institute of Human Genetics, University of Aarhus, DK 8000 Aarhus C, Denmark
    BMC Med Genet 10:20. 2009
    ..The whole region seems related to the cellular response to external damaging agents and markers in it are associated with risk of several cancers...
  6. ncbi Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    Rasmus Wernersson
    Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark
    BMC Genomics 6:70. 2005
    ..Comparative whole genome analysis of Mammalia can benefit from the addition of more species. The pig is an obvious choice due to its economic and medical importance as well as its evolutionary position in the artiodactyls...
  7. ncbi Gene conversion in the rice genome
    Shuqing Xu
    Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing Proteomics Institute, Beijing 101300, China
    BMC Genomics 9:93. 2008
    ..Gene conversion can both homogenize genes and recruit point mutations thereby shaping the evolution of multigene families. In the rice genome, the large number of duplicated genes increases opportunities for gene conversion...
  8. ncbi Identification and characterization of insect-specific proteins by genome data analysis
    Guojie Zhang
    State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology Chinese Academy of Sciences, Haidian Beijing 100080, China
    BMC Genomics 8:93. 2007
    ..Here we present results from a computational method that uses genome analysis to characterize insect and eukaryote proteomes as an approximation complementary to experimental approaches...
  9. ncbi Genetic diversity, molecular phylogeny and selection evidence of the silkworm mitochondria implicated by complete resequencing of 41 genomes
    Dong Li
    The Key Sericultural Laboratory of Agricultural Ministry, College of Biotechnology, Southwest University, Chongqing 400715, China
    BMC Evol Biol 10:81. 2010
    ....
  10. ncbi Estimation of allele frequency and association mapping using next-generation sequencing data
    Su Yeon Kim
    Departments of Integrative Biology and Statistics, UC Berkeley, Berkeley, CA 94720, USA
    BMC Bioinformatics 12:231. 2011
    ..g., < 15X). However, SNP calling and allele frequency estimation in such studies is associated with substantial statistical uncertainty because of varying coverage and high error rates...
  11. ncbi A cross-species alignment tool (CAT)
    Heng Li
    Beijing Institute of Genomics of Chinese Academy of Sciences, Beijing Genomics Institute, Beijing 101300, China
    BMC Bioinformatics 8:349. 2007
    ..The first group is used for intra-species alignments, among which are successful ones with high specificity and speed. The other group contains more sensitive methods which are usually applied in aligning inter-species sequences...
  12. ncbi RePS: a sequence assembler that masks exact repeats identified from the shotgun data
    Jun Wang
    Hangzhou Genomics Institute, Institute of Bioinformatics of Zhejiang University, Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310007, China
    Genome Res 12:824-31. 2002
    ..We show with real data for human and rice that reasonable assemblies are possible even at coverages of only 4x to 6x, despite having up to 42.2% in exact repeats...
  13. ncbi The diploid genome sequence of an Asian individual
    Jun Wang
    Beijing Genomics Institute at Shenzhen, Shenzhen 518000, China
    Nature 456:60-5. 2008
    ..These variations were considered for their potential biological impact. Our sequence data and analyses demonstrate the potential usefulness of next-generation sequencing technologies for personal genomics...
  14. ncbi Genome sequence and global sequence variation map with 5.5 million SNPs in Chinese rhesus macaque
    Xiaodong Fang
    Beijing Genomics Institute Shenzhen, Chinese Academy of Sciences, Shenzhen 518083, China
    Genome Biol 12:R63. 2011
    ..Rhesus macaque (Macaca mulatta) is the most widely used nonhuman primate animal in biomedical research. A global map of genetic variations in rhesus macaque is valuable for both evolutionary and functional studies...
  15. ncbi Evolutionary transients in the rice transcriptome
    Jun Wang
    Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China
    Genomics Proteomics Bioinformatics 8:211-28. 2010
    ..Using the rice gene set as a test case, we argue that this phenomenon goes a long way towards explaining why there are so many more rice genes than Arabidopsis genes, and why most excess rice genes show low similarity to eudicots...
  16. ncbi The R protein of SARS-CoV: analyses of structure and function based on four complete genome sequences of isolates BJ01-BJ04
    Zuyuan Xu
    Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China
    Genomics Proteomics Bioinformatics 1:155-65. 2003
    ..Findings suggest that it is possible to obtain information about the phylogeny of SARS-CoV, as well as potential tools for drug design, genotyping and diagnostics of SARS...
  17. ncbi Genome organization of the SARS-CoV
    Jing Xu
    Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China
    Genomics Proteomics Bioinformatics 1:226-35. 2003
    ..The analysis of TRS supports the minus strand extending transcription mechanism of coronavirus. The SNP analysis of different isolates reveals that mutations of the sequences do not affect the prediction results of ORFs...
  18. ncbi The sequence and de novo assembly of the giant panda genome
    Ruiqiang Li
    BGI Shenzhen, Shenzhen 518083, China
    Nature 463:311-7. 2010
    ....
  19. ncbi Mouse transcriptome: neutral evolution of 'non-coding' complementary DNAs
    Jun Wang
    James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou 310007, China
    Nature 431:1 p following 757; discussion following 757. 2004
  20. ncbi SNP detection for massively parallel whole-genome resequencing
    Ruiqiang Li
    Beijing Genomics Institute at Shenzhen, Shenzhen 518000, China
    Genome Res 19:1124-32. 2009
    ..Our analyses demonstrate that our method has a very low false call rate at any sequencing depth and excellent genome coverage at a high sequencing depth...
  21. ncbi Gene identification and expression analysis of 86,136 Expressed Sequence Tags (EST) from the rice genome
    Yan Zhou
    Hangzhou Genomics Institute Institute of Bioinformatics of Zhejiang University Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310007, China
    Genomics Proteomics Bioinformatics 1:26-42. 2003
    ..We also identified some possible library specific genes and a number of enzymes and transcription factors that contribute to rice development...
  22. ncbi Origin and evolution of new exons in rodents
    Wen Wang
    CAS Max Planck Junior Research Group, Key Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, China
    Genome Res 15:1258-64. 2005
    ..Most of the new exons appear to be alternative exons that are expressed at low levels...
  23. ncbi De novo assembly of human genomes with massively parallel short read sequencing
    Ruiqiang Li
    Beijing Genomics Institute at Shenzhen, Shenzhen 518083, China
    Genome Res 20:265-72. 2010
    ..3 and 61.9 kb, respectively. The development of this de novo short read assembly method creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost-effective way...
  24. ncbi Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
    Guojie Zhang
    Beijing Genomics Institute at Shenzhen, Shenzhen 518000, China
    Genome Res 20:646-54. 2010
    ..Taken together, our data provide extensive evidence that transcriptional regulation in rice is vastly more complex than previously believed...
  25. ncbi The E protein is a multifunctional membrane protein of SARS-CoV
    Qingfa Wu
    Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China
    Genomics Proteomics Bioinformatics 1:131-44. 2003
    ..Our phylogenetic analyses of the E protein sequences in all published coronaviruses place SARS-CoV in an independent group in Coronaviridae and suggest a non-human animal origin...
  26. ncbi A comparison of rice chloroplast genomes
    Jiabin Tang
    Institute of Genetics and Developmental Biology and Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China
    Plant Physiol 135:412-20. 2004
    ..Based on the total number of nucleotide substitutions between the two chloroplast genomes, we dated the divergence of indica and japonica chloroplast genomes as occurring approximately 86,000 to 200,000 years ago...
  27. ncbi Sequencing, annotation and comparative analysis of nine BACs of giant panda (Ailuropoda melanoleuca)
    Yang Zheng
    Beijing Institute of Genomics, Chinese Academy of Sciences CAS, Beijing, China
    Sci China Life Sci 53:107-11. 2010
    ..Our results provide detailed sequence and structure information for new genes and repeats of giant panda, which will be helpful for further studies on the giant panda...
  28. ncbi Boron removal from aqueous solution by direct contact membrane distillation
    Deyin Hou
    State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco Environmental Sciences, Chinese Academy of Sciences, PO Box 2871, Beijing 100085, China
    J Hazard Mater 177:613-9. 2010
    ..All the experimental results indicated that DCMD could be efficiently used for boron removal from aqueous solution...
  29. ncbi Vertebrate gene predictions and the problem of large genes
    Jun Wang
    Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 101300, China
    Nat Rev Genet 4:741-9. 2003
    ..The crucial variable is gene size (including introns)--genes of the most extreme sizes, especially very large genes, are most likely to be incorrectly predicted...
  30. ncbi High rate of chimeric gene origination by retroposition in plant genomes
    Wen Wang
    CAS Max Plank Junior Research Group, Key Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China
    Plant Cell 18:1791-802. 2006
    ..These observations suggest that retroposition is an important mechanism that governs gene evolution in rice and other grass species...
  31. ncbi Compositional gradients in Gramineae genes
    Gane Ka Shu Wong
    Hangzhou Genomics Institute, Institute of Bioinformatics of Zhejiang University, Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310007, China
    Genome Res 12:851-6. 2002
    ..The magnitudes of these gradients are large enough to hinder the annotation of the rice genome and to confound the detection of protein homologies across the monocot-eudicot divide...
  32. ncbi Genome sequence and analysis of the tuber crop potato
    Xun Xu
    BGI Shenzhen, Chinese Ministry of Agricultural, Key Lab of Genomics, BeiShan Industrial Zone, Yantian District, Shenzhen 518083, China
    Nature 475:189-95. 2011
    ..Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital crop...
  33. ncbi SOAP2: an improved ultrafast tool for short read alignment
    Ruiqiang Li
    Beijing Genomics Institute at Shenzhen, Shenzhen, 518083, China
    Bioinformatics 25:1966-7. 2009
    ..A consensus builder has also been developed for consensus assembly and SNP detection from alignment of short reads on a reference genome. AVAILABILITY: http://soap.genomics.org.cn...
  34. ncbi KaKs_Calculator: calculating Ka and Ks through model selection and model averaging
    Zhang Zhang
    Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100080, China
    Genomics Proteomics Bioinformatics 4:259-63. 2006
    ..In addition, several existing methods for calculating Ka and Ks are also incorporated into this software...
  35. ncbi The complete mitochondrial genome of the Chinese hook snout carp Opsariichthys bidens (Actinopterygii: Cypriniformes) and an alternative pattern of mitogenomic evolution in vertebrate
    Xuzhen Wang
    Laboratory of Fish Phylogenetics and Biogeography, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
    Gene 399:11-9. 2007
    ..Bayesian analysis of 12 concatenated mitochondrial protein sequences for O. bidens and 46 other teleostean taxa supports the monophyly of Cypriniformes and Otophysi and results in a robust estimate of the otophysan phylogeny...
  36. ncbi The analysis of large-scale gene expression correlated to the phase changes of the migratory locust
    Le Kang
    National Laboratory of Integrated Management of Insect Pests and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing 100080, China
    Proc Natl Acad Sci U S A 101:17611-5. 2004
    ..This study provides ample molecular markers and genomic information on hemimetabolous insects and insights into the genetic and molecular mechanisms of phase changes in locusts...
  37. ncbi Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup
    Xiao-jing Yu
    Key Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, China
    Genomics 88:745-51. 2006
    ..We also demonstrated that rhesus macaque performed much better than mouse as an outgroup in identifying lineage-specific selection in humans...
  38. ncbi The complete mitochondrial genome of the helmet catfish Cranoglanis bouderius (Siluriformes: Cranoglanididae) and the phylogeny of otophysan fishes
    Zuogang Peng
    Laboratory of Fish Phylogenetics and Biogeography, Institute of Hydrobiology, Chinese Academy of Sciences, 7th Donghu South Road, Wuhan 430072, China
    Gene 376:290-7. 2006
    ..In addition, the phylogenetic placement of the family Cranoglanididae among siluriform families was also discussed...
  39. ncbi A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
    Jun Yu
    Beijing Genomics Institute/Center of Genomics and Bioinformatics, Chinese Academy of Sciences, Beijing 101300, China
    Science 296:79-92. 2002
    ..4% of predicted rice genes had a homolog in A. thaliana. The large proportion of rice genes with no recognizable homologs is due to a gradient in the GC content of rice coding sequences...
  40. ncbi Building the sequence map of the human pan-genome
    Ruiqiang Li
    BGI Shenzhen, Shenzhen 518083, China
    Nat Biotechnol 28:57-63. 2010
    ..The extensive amount of novel sequence contributing to the genetic variation of the pan-genome indicates the importance of using complete genome sequencing and de novo assembly...
  41. ncbi BGI-RIS V2
    Ximiao He
    Beijing Genomics Institute, Chinese Academy of Sciences, Beijing, China
    Methods Mol Biol 406:275-99. 2007
    ..This database is available through the web server (http://rise.genomics.org.cn or http://rice.genomics.org.cn) and the File Transfer Protocol (FTP) server (ftp://ftp.genomics.org.cn/pub/database/rice)...
  42. ncbi Fabrication of asymmetric poly (m-phenylene isophthalamide) nanofiltration membrane for chromium (VI) removal
    Xiaojing Ren
    State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
    J Environ Sci (China) 22:1335-41. 2010
    ..It is concluded that chromium(VI) could be effectively removed from chromium-containing wastewater by the PMIA nanofiltration membranes while maintaining their pollution resistance under alkaline condition...
  43. ncbi A mitochondrial genome sequence of the Tibetan antelope (Pantholops hodgsonii)
    Shu Qing Xu
    Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China
    Genomics Proteomics Bioinformatics 3:5-17. 2005
    ....
  44. ncbi SOAP: short oligonucleotide alignment program
    Ruiqiang Li
    Beijing Genomics Institute at Shenzhen, Shenzhen 518083, China
    Bioinformatics 24:713-4. 2008
    ..SOAP is a command-driven program, which supports multi-threaded parallel computing, and has a batch module for multiple query sets. AVAILABILITY: http://soap.genomics.org.cn...
  45. ncbi Sequencing of 50 human exomes reveals adaptation to high altitude
    Xin Yi
    BGI Shenzhen, Shenzhen 518083, China
    Science 329:75-8. 2010
    ..This SNP's association with erythrocyte abundance supports the role of EPAS1 in adaptation to hypoxia. Thus, a population genomic survey has revealed a functionally important locus in genetic adaptation to high altitude...
  46. ncbi Mitochondrial molecular clocks and the origin of the major Otocephalan clades (Pisces: Teleostei): A new insight
    Zuogang Peng
    Laboratory of Fish Phylogenetics and Biogeography, Institute of Hydrobiology, Chinese Academy of Sciences, 7# Donghu South Road, Wuhan 430072, China
    Gene 370:113-24. 2006
    ..The origin of the Otocephala is estimated as having occurred about 282 Mya, with the origin of the Otophysi being estimated at about 251 Mya...
  47. ncbi Fluoride removal from brackish groundwater by direct contact membrane distillation
    Deyin Hou
    State Key Laboratory of Environmental Aquatic Chemistry Research Center for Eco Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
    J Environ Sci (China) 22:1860-7. 2010
    ..In addition, a 300 hr continuous fluoride removal experiment of acidified groundwater was carried out with concentration factor at 4.0, the permeate flux kept stable and the permeate fluoride was not detected...
  48. ncbi The M protein of SARS-CoV: basic structural and immunological properties
    Yongwu Hu
    Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300, China
    Genomics Proteomics Bioinformatics 1:118-30. 2003
    ..2% of the entire ORF and screened them by using ELISA (enzyme-linked immunosorbent assay) with sera from SARS patients. The results confirmed our predictions on antigenic sites...
  49. ncbi A human gut microbial gene catalogue established by metagenomic sequencing
    Junjie Qin
    BGI Shenzhen, Shenzhen 518083, China
    Nature 464:59-65. 2010
    ..We define and describe the minimal gut metagenome and the minimal gut bacterial genome in terms of functions present in all individuals and most bacteria, respectively...
  50. ncbi A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates
    Chen Chen
    Beijing Genomics Institute, Chinese Academy of Sciences, Beijing, China
    PLoS ONE 2:e315. 2007
    ..However, the molecular mechanisms underlying STSS are poorly understood...
  51. ncbi Regeneration of carbon nanotubes exhausted with dye reactive red 3BS using microwave irradiation
    Jun Wang
    State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco Environmental Sciences, Chinese Academy of Sciences, 18 Shuangqing Road, Beijing 100085, China
    J Hazard Mater 178:1125-7. 2010
    ..8% after four cycles regeneration. The decrease in adsorption capacity was suggested to be due to the deposition of decomposition residues in CNT pores, which blocked the carbon porosity and decreased the specific surface area...
  52. ncbi [Effects of litter coverage and watering frequency on seed germination and seedling survival of Castanopsis fissa]
    Jun Wang
    National Field Research Station of Forestry Ecosystem, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
    Ying Yong Sheng Tai Xue Bao 19:2097-102. 2008
    ..fissa seedlings was enhanced significantly by litter covering. It was suggested that keeping a litter layer on soil surface could benefit the seed germination and seedling survival of C. fissa to restore subtropical shrub land...
  53. ncbi Pathways and determinants of early spontaneous vegetation succession in degraded lowland of South China
    Wen Jun Duan
    Heshan Hilly Land Interdisciplinary Experimental Station, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
    J Integr Plant Biol 50:147-56. 2008
    ..Our results showed that the environmental variables changed in diverse directions, and that soil bulk density, soil water capacity and soil acidity were the most important factors...
  54. ncbi Whole genome DNA methylation analysis based on high throughput sequencing technology
    Ning Li
    Beijing Genomics Institute at Shenzhen, Shenzhen 518000, China
    Methods 52:203-12. 2010
    ....
  55. ncbi Molecular signaling aptamers for real-time fluorescence analysis of protein
    Jun Wang
    Institute of Chemistry, Chinese Academy of Sciences, Beijing, China
    IUBMB Life 57:123-8. 2005
    ..Different signaling strategies of using dual labeled aptamers based on fluorescence resonance energy transfer (FRET), one fluorophore labeled aptamers based on fluorescence anisotropy assay, or other label-free aptamers are reviewed...
  56. ncbi The Genomes of Oryza sativa: a history of duplications
    Jun Yu
    Beijing Institute of Genomics of the Chinese Academy of Sciences, Beijing Genomics Institute, Beijing Proteomics Institute, China
    PLoS Biol 3:e38. 2005
    ..More important, ongoing individual gene duplications provide a never-ending source of raw material for gene genesis and are major contributors to the differences between members of the grass family...
  57. ncbi Correlation between Ka/Ks and Ks is related to substitution model and evolutionary lineage
    Jun Li
    Beijing Genomics Institute, Shenzhen, Building Complex, BeiShan Industrial Zone, Yantian District, Shenzhen, 518083, China
    J Mol Evol 68:414-23. 2009
    ..Our results indicated that currently used algorithms for Ka and Ks calculations are flawed and need improvements...
  58. ncbi WEGO: a web tool for plotting GO annotations
    Jia Ye
    James D. Watson Institute of Genome Sciences of Zhejiang University, Hangzhou 310008, China
    Nucleic Acids Res 34:W293-7. 2006
    ..genomics.org.cn. There are two available mirror sites at http://wego2.genomics.org.cn and http://wego.genomics.com.cn. Any suggestions are welcome at ...
  59. ncbi Analysis of 142 genes resolves the rapid diversification of the rice genus
    Xin Hui Zou
    State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
    Genome Biol 9:R49. 2008
    ..To take full advantage of rice genome resources for biological research and rice breeding, we will benefit from the availability of a robust phylogeny of the rice genus...
  60. ncbi Characterization of soybean genomic features by analysis of its expressed sequence tags
    Ai-Guo Tian
    Plant Biotechnology Laboratory, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Datun Road, 100101, Beijing, China
    Theor Appl Genet 108:903-13. 2004
    ..truncatula. Furthermore, the combined analysis of the EST database and the BAC-contig sequences revealed that the total gene number in the soybean genome is about 63,501...
  61. ncbi Sorption of endrin to montmorillonite and kaolinite clays
    Xianjia Peng
    State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco Environmental Sciences, Chinese Academy of Sciences, Beijing, China
    J Hazard Mater 168:210-4. 2009
    ....
  62. ncbi Efficient separation of homologous alpha-lactalbumin from transgenic bovine milk using optimized hydrophobic interaction chromatography
    Yan Zhang
    National Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, 1, Bei er tiao, Zhong Guan Cun, Beijing 100190, China Graduate School of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, China
    J Chromatogr A 1217:3668-73. 2010
    ..The overall recovery of rHLA was up to 67.1% with the purity greater than 95%. Circular dichroism spectroscopy (CD) and mass spectrogram (MS) confirmed the native state and glycosylated form of the purified rHLA...
  63. ncbi Analysis of expressed sequence tags from biodiesel plant Jatropha curcas embryos at different developmental stages
    Mao sheng Chen
    Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, 88 Xuefu Road, Kunming, Yunnan, China
    Plant Sci 181:696-700. 2011
    ..Some of these genes may also play important roles in embryogenesis, morphogenesis, defense response and adaptive mechanisms in plants...
  64. ncbi [Seasonal variation of soil respiration and its components in tropical rain forest and rubber plantation in Xishuangbanna, Yunnan]
    Hua Zheng Lu
    Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla 666303, Yunnan, China
    Ying Yong Sheng Tai Xue Bao 20:2315-22. 2009
    ..When the soil temperature at 5 cm depth varied from 12 degrees C to 32 degrees C, the Q10 values for SR, HR, and RR rates were higher in RF than in RP. HR had the highest Q10 value, while RR had the lowest one...
  65. ncbi Preparation of hydrophobic PVDF hollow fiber membranes for desalination through membrane distillation
    Deyin Hou
    State Key Laboratory of Environmental Aquatic Chemistry, Research Center for Eco Environmental Sciences, Chinese Academy of Sciences, P O Box 2871, Beijing 100085, China
    Water Sci Technol 59:1219-26. 2009
    ....
  66. ncbi Genomic organization, transcript variants and comparative analysis of the human nucleoporin 155 (NUP155) gene
    Xiuqing Zhang
    Human Genome Center, Institute of Genetics, Chinese Academy of Sciences, Datun Road, Beijing 100101, China
    Gene 288:9-18. 2002
    ..Different gene orders in the human and Fugu genomic regions harboring the Nup155 orthologs advocate cautious interpretation of synteny in comparative genomic analysis even within the vertebrate lineage...
  67. ncbi Aptamer-based ATP assay using a luminescent light switching complex
    Jun Wang
    Institute of Chemistry, Chinese Academy of Sciences, Beijing 100080, China
    Anal Chem 77:3542-6. 2005
    ..The successful detection of ATP indicates that using the signaling aptamers with [Ru(phen)2(dppz)]2+ is expected to be a general method for aptamer-based target detection...
  68. ncbi [New-generation high-throughput technologies based 'omics' research strategy in human disease]
    Xu Yang
    BGI Shenzhen, Shenzhen 518083, China
    Yi Chuan 33:829-46. 2011
    ....
  69. ncbi Study of the effect of metal ion on the specific interaction between protein and aptamer by atomic force microscopy
    Yaxin Jiang
    Institute of Chemistry, Chinese Academy of Sciences, Beijing 100080, China
    J Nanosci Nanotechnol 4:611-5. 2004
    ..The results from the AFM force measurements show that the metal ions not only reduce the single-molecular rupture force but also reduce the number of bonds formed between IgE and the aptamer...
  70. ncbi Study of fibrinogen adsorption on self-assembled monolayers on Au(111) by atomic force microscopy
    Yi Lin
    Center of Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100080, China
    Ultramicroscopy 105:129-36. 2005
    ....
  71. ncbi [Video-assisted minimally invasive radiofrequency ablation in the treatment of persistent atrial fibrillation]
    Jian gang Wang
    Department of Cardiac Surgery, Beijing Anzhen Hospital, Capital Medical University, Beijing 100029, China
    Zhonghua Wai Ke Za Zhi 48:1561-4. 2010
    ..To evaluate the effectiveness of the video-assisted minimally invasive radiofrequency ablation combined irbesartan use for the treatment of the persistent atrial fibrillation (AF)...
  72. ncbi Otefin, a nuclear membrane protein, determines the fate of germline stem cells in Drosophila via interaction with Smad complexes
    Xiaoyong Jiang
    State Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences, 25 Beisihuanxi Road, Haidian, Beijing, 100080, China
    Dev Cell 14:494-506. 2008
    ..Thus, we demonstrate that specific nuclear membrane components mediate signal-dependent transcriptional effects to control stem cell behavior...
  73. ncbi Natural recovery of different areas of a deserted quarry in South China
    Wenjun Duan
    Heshan National Field Research Station of Forest Ecosystem, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
    J Environ Sci (China) 20:476-81. 2008
    ..There existed abiotic and biotic thresholds during quarrying restoration. Suggestions had been presented that could have accelerated the process of natural recovery in quarries...
  74. ncbi Capillary array electrophoresis for the research of racemization reaction of L-amino acids
    Jun Wang
    Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China
    J Chromatogr A 1144:279-82. 2007
    ....
  75. ncbi The impact of paracrine signaling in brain microvascular endothelial cells on the survival of neurons
    Weihong Li
    School of Preclinical Medicine, Beijing University of Chinese Medicine, 11 Bei San Huan Dong Lu, Chao Yang District, Beijing 100029, China
    Brain Res 1287:28-38. 2009
    ..However, this protective effect was lost after BMECs injury; in fact, the conditioned medium became neurotoxic. Therefore, it appears that early recovery of BMECs might be helpful for neuron survival...
  76. ncbi [Monitoring of polychlorinated biphenyls in the atmosphere of the Pearl River Delta using PUF-passive air sampler]
    Jun Wang
    State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
    Huan Jing Ke Xue 28:478-81. 2007
    ..It is obvious that distribution of PCBs in PRD is higher and lower in HK. The results demonstrated that PUF-PAS technique can be used in the monitoring of PAHs in the atmosphere at a regional or global scale...
  77. ncbi The effects of land use and its patterns on soil properties in a small catchment of the Loess Plateau
    Jun Wang
    Department of Systems Ecology, Research Center for Eco Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
    J Environ Sci (China) 15:263-6. 2003
    ....