Raphael Leplae

Summary

Country: Belgium

Publications

  1. ncbi ACLAME: a CLAssification of Mobile genetic Elements
    Raphael Leplae
    Service de Conformation de Macromolécules Biologiques et de Bioinformatique, Universite Libre de Bruxelles, Belgium
    Nucleic Acids Res 32:D45-9. 2004
  2. ncbi A first global analysis of plasmid encoded proteins in the ACLAME database
    Raphael Leplae
    SCMBB, Universite Libre de Bruxelles, Bvd du Triomphe, Bruxelles, Belgium
    FEMS Microbiol Rev 30:980-94. 2006
  3. ncbi ACLAME: a CLAssification of Mobile genetic Elements, update 2010
    Raphael Leplae
    Bioinformatique des Génomes et des Réseaux, Universite Libre de Bruxelles, Boulevard du Triomphe, 1050 Bruxelles, Belgium
    Nucleic Acids Res 38:D57-61. 2010
  4. ncbi Prophinder: a computational tool for prophage prediction in prokaryotic genomes
    Gipsi Lima-Mendez
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, 1050 Bruxelles, Belgium
    Bioinformatics 24:863-5. 2008
  5. ncbi PhiGO, a phage ontology associated with the ACLAME database
    Ariane Toussaint
    Service de Conformation de Macromolécules Biologiques et de Bioinformatique, Universite Libre de Bruxelles, ULB, Bvd du Triomphe, Campus Plaine CP 263, B1050 Bruxelles, Belgium
    Res Microbiol 158:567-71. 2007
  6. ncbi Analysis of the phage sequence space: the benefit of structured information
    Gipsi Lima-Mendez
    Service de Conformation de Macromolécules Biologiques et de Bioinformatique, Universite Libre de Bruxelles, CP 263, Boulevard du Triomphe, 1050, Bruxelles, Belgium
    Virology 365:241-9. 2007
  7. ncbi Reticulate representation of evolutionary and functional relationships between phage genomes
    Gipsi Lima-Mendez
    Service de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Bruxelles, Belgium
    Mol Biol Evol 25:762-77. 2008
  8. ncbi Evidence for copper homeostasis function of metallothionein (MT3) in the hyperaccumulator Thlaspi caerulescens
    Nancy H Roosens
    Laboratoire de Physiologie et Génétique Moléculaire des Plantes, Universite Libre de Bruxelles, Campus Plaine CP 242 Bld du triomphe, B 1050 Brussels, Belgium
    FEBS Lett 577:9-16. 2004
  9. ncbi Variations in plant metallothioneins: the heavy metal hyperaccumulator Thlaspi caerulescens as a study case
    Nancy H Roosens
    Laboratoire de Physiologie et Génétique Moléculaire des Plantes, Universite Libre de Bruxelles, Campus Plaine CP 242 Bd du triomphe, 1050, Brussels, Belgium
    Planta 222:716-29. 2005
  10. ncbi The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids
    Ariane Toussaint
    SCMBB, Universite Libre de Bruxelles, Brussels, Belgium
    Appl Environ Microbiol 69:4837-45. 2003

Detail Information

Publications12

  1. ncbi ACLAME: a CLAssification of Mobile genetic Elements
    Raphael Leplae
    Service de Conformation de Macromolécules Biologiques et de Bioinformatique, Universite Libre de Bruxelles, Belgium
    Nucleic Acids Res 32:D45-9. 2004
    ....
  2. ncbi A first global analysis of plasmid encoded proteins in the ACLAME database
    Raphael Leplae
    SCMBB, Universite Libre de Bruxelles, Bvd du Triomphe, Bruxelles, Belgium
    FEMS Microbiol Rev 30:980-94. 2006
    ....
  3. ncbi ACLAME: a CLAssification of Mobile genetic Elements, update 2010
    Raphael Leplae
    Bioinformatique des Génomes et des Réseaux, Universite Libre de Bruxelles, Boulevard du Triomphe, 1050 Bruxelles, Belgium
    Nucleic Acids Res 38:D57-61. 2010
    ..ulb.ac.be). The BLAST interface for querying the database has been extended and numerous tools for in-depth analysis of the results have been added...
  4. ncbi Prophinder: a computational tool for prophage prediction in prokaryotic genomes
    Gipsi Lima-Mendez
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, 1050 Bruxelles, Belgium
    Bioinformatics 24:863-5. 2008
    ..AVAILABILITY: Softare is available at http://aclame.ulb.ac.be/prophinder..
  5. ncbi PhiGO, a phage ontology associated with the ACLAME database
    Ariane Toussaint
    Service de Conformation de Macromolécules Biologiques et de Bioinformatique, Universite Libre de Bruxelles, ULB, Bvd du Triomphe, Campus Plaine CP 263, B1050 Bruxelles, Belgium
    Res Microbiol 158:567-71. 2007
    ..PhiGO uses the Gene Ontology schema, the de facto standard for describing knowledge about gene products across many databases...
  6. ncbi Analysis of the phage sequence space: the benefit of structured information
    Gipsi Lima-Mendez
    Service de Conformation de Macromolécules Biologiques et de Bioinformatique, Universite Libre de Bruxelles, CP 263, Boulevard du Triomphe, 1050, Bruxelles, Belgium
    Virology 365:241-9. 2007
    ....
  7. ncbi Reticulate representation of evolutionary and functional relationships between phage genomes
    Gipsi Lima-Mendez
    Service de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Bruxelles, Belgium
    Mol Biol Evol 25:762-77. 2008
    ..These 2 classification schemes provide an automatic and dynamic way of representing the relationships within the phage population and can be extended to include newly sequenced phage genomes, as well as other types of genetic elements...
  8. ncbi Evidence for copper homeostasis function of metallothionein (MT3) in the hyperaccumulator Thlaspi caerulescens
    Nancy H Roosens
    Laboratoire de Physiologie et Génétique Moléculaire des Plantes, Universite Libre de Bruxelles, Campus Plaine CP 242 Bld du triomphe, B 1050 Brussels, Belgium
    FEBS Lett 577:9-16. 2004
    ..thaliana than for T. caerulescens. Functional testing in yeast and Northern blot analysis added further evidence for adaptative variations of MT3 for the maintenance of Cu homeostasis in a metal hyperaccumulator...
  9. ncbi Variations in plant metallothioneins: the heavy metal hyperaccumulator Thlaspi caerulescens as a study case
    Nancy H Roosens
    Laboratoire de Physiologie et Génétique Moléculaire des Plantes, Universite Libre de Bruxelles, Campus Plaine CP 242 Bd du triomphe, 1050, Brussels, Belgium
    Planta 222:716-29. 2005
    ..caerulescens than in A. thaliana. Moreover, their differential expression patterns in organs and in response to metal exposure, suggest that the two types of MTs may have diverse roles and functions in T. caerulescens...
  10. ncbi The biphenyl- and 4-chlorobiphenyl-catabolic transposon Tn4371, a member of a new family of genomic islands related to IncP and Ti plasmids
    Ariane Toussaint
    SCMBB, Universite Libre de Bruxelles, Brussels, Belgium
    Appl Environ Microbiol 69:4837-45. 2003
    ..Tn4371 thus appears to represent a new family of potentially mobile genomic islands with a broad host range since they reside in a wide range of soil proteobacteria, including plant pathogens...
  11. ncbi Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families
    Raphael Leplae
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Faculte des Sciences, Universite Libre de Bruxelles, Bld du Triomphe, 1050 Bruxelles, Belgium
    Nucleic Acids Res 39:5513-25. 2011
    ..Therefore, addiction might play a major role in the evolutionary success of TA systems both on mobile genetic elements and in bacterial chromosomes...
  12. ncbi Genetic diversity of Group A Streptococcus M protein: implications for typing and vaccine development
    Pierre R Smeesters
    Laboratoire de Génétique et Physiologie Bactérienne, Institut de Biologie et de Médecine Moléculaires, Faculte des Sciences, Universite Libre de Bruxelles, 12 rue des Professeurs Jeener et Brachet, 6041 Gosselies, Belgium
    Vaccine 26:5835-42. 2008
    ....