Steffen Durinck

Summary

Affiliation: Katholieke Universiteit Leuven
Country: Belgium

Publications

  1. ncbi BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
    Steffen Durinck
    Department of Electronical Engineering, ESAT SCD, K U Leuven, Kasteelpark Arenberg 10, 3001 Leuven Heverlee, Belgium
    Bioinformatics 21:3439-40. 2005
  2. ncbi Importing MAGE-ML format microarray data into BioConductor
    Steffen Durinck
    Department of Electronical Engineering, ESAT-SCD, K.U. Leuven, Kasteelpark Arenberg 10, 3001, Leuven-Heverlee, Belgium
    Bioinformatics 20:3641-2. 2004
  3. ncbi Expression Profiler: next generation--an online platform for analysis of microarray data
    Misha Kapushesky
    European Bioinformatics Institute, United Kingdom
    Nucleic Acids Res 32:W465-70. 2004
  4. ncbi Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress
    Gaurab Mukherjee
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Plant Physiol 139:632-6. 2005
  5. ncbi Pre-processing of microarray data and analysis of differential expression
    Steffen Durinck
    Katholieke Universiteit Leuven, Leuven, Belgium
    Methods Mol Biol 452:89-110. 2008
  6. ncbi Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications
    Pierre Hilson
    Department of Plant Systems Biology, Flanders Interuniversity Institute for Biotechnology VIB, Ghent University, B 9052 Gent, Belgium
    Genome Res 14:2176-89. 2004
  7. ncbi Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis
    Joke Allemeersch
    Department of Electrical Engineering, Faculty of Engineering, Katholieke Universiteit Leuven, B-3001 Heverlee, Belgium
    Plant Physiol 137:588-601. 2005

Collaborators

Detail Information

Publications7

  1. ncbi BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
    Steffen Durinck
    Department of Electronical Engineering, ESAT SCD, K U Leuven, Kasteelpark Arenberg 10, 3001 Leuven Heverlee, Belgium
    Bioinformatics 21:3439-40. 2005
    ..g. Ensembl). The biomaRt package provides a tight integration of large, public or locally installed BioMart databases with data analysis in Bioconductor creating a powerful environment for biological data mining...
  2. ncbi Importing MAGE-ML format microarray data into BioConductor
    Steffen Durinck
    Department of Electronical Engineering, ESAT-SCD, K.U. Leuven, Kasteelpark Arenberg 10, 3001, Leuven-Heverlee, Belgium
    Bioinformatics 20:3641-2. 2004
    ..AVAILABILITY: http://www.bioconductor.org. Open Source...
  3. ncbi Expression Profiler: next generation--an online platform for analysis of microarray data
    Misha Kapushesky
    European Bioinformatics Institute, United Kingdom
    Nucleic Acids Res 32:W465-70. 2004
    ..EP:NG is an open-source project, encouraging broad distribution and further extensions from the scientific community...
  4. ncbi Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress
    Gaurab Mukherjee
    EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Plant Physiol 139:632-6. 2005
    ..The AtMIAMExpress submission tool is available at http://www.ebi.ac.uk/at-miamexpress/. The software is open source and is available from http://sourceforge.net/projects/miamexpress/. For information, contact miamexpress@ebi.ac.uk...
  5. ncbi Pre-processing of microarray data and analysis of differential expression
    Steffen Durinck
    Katholieke Universiteit Leuven, Leuven, Belgium
    Methods Mol Biol 452:89-110. 2008
    ..Currently one of the most popular and freely available software tools is Bioconductor. This chapter uses Bioconductor to preprocess microarray data, detect differentially expressed genes, and annotate the gene lists of interest...
  6. ncbi Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications
    Pierre Hilson
    Department of Plant Systems Biology, Flanders Interuniversity Institute for Biotechnology VIB, Ghent University, B 9052 Gent, Belgium
    Genome Res 14:2176-89. 2004
    ..We show that in planta expression of GST hairpin RNA results in the expected phenotypes in silenced Arabidopsis lines. These versatile GST resources provide novel and powerful tools for functional genomics...
  7. ncbi Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis
    Joke Allemeersch
    Department of Electrical Engineering, Faculty of Engineering, Katholieke Universiteit Leuven, B-3001 Heverlee, Belgium
    Plant Physiol 137:588-601. 2005
    ..The results establish the CATMA array as a mature alternative to the Affymetrix and Agilent platforms...