Sylvain Brohée

Summary

Country: Belgium

Publications

  1. ncbi Evaluation of clustering algorithms for protein-protein interaction networks
    Sylvain Brohée
    Service de Conformation des Macromolécules Biologiques et de Bioinformatique, Universite Libre de Bruxelles, CP 263, Campus Plaine, Bd, du Triomphe, B 1050 Bruxelles, Belgium
    BMC Bioinformatics 7:488. 2006
  2. ncbi NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
    Sylvain Brohée
    Laboratoire de Bioinformatique des Génomes et Réseaux BiGRE, Universite Libre de Bruxelles ULB, Boulevard du Triomphe, CP263, B 1050 Bruxelles, Belgium
    Nucleic Acids Res 36:W444-51. 2008
  3. ncbi Network Analysis Tools: from biological networks to clusters and pathways
    Sylvain Brohée
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Campus Plaine, CP 263, Boulevard du Triomphe, Bruxelles, Belgium
    Nat Protoc 3:1616-29. 2008
  4. ncbi Unraveling networks of co-regulated genes on the sole basis of genome sequences
    Sylvain Brohée
    Lab Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles ULB, CP 263, Campus Plaine, Bld du Triomphe, 1050 Brussels, Belgium
    Nucleic Acids Res 39:6340-58. 2011
  5. ncbi RSAT: regulatory sequence analysis tools
    Morgane Thomas-Chollier
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Campus Plaine, CP 263 Bld du Triomphe, B 1050 Bruxelles, Belgium
    Nucleic Acids Res 36:W119-27. 2008

Detail Information

Publications5

  1. ncbi Evaluation of clustering algorithms for protein-protein interaction networks
    Sylvain Brohée
    Service de Conformation des Macromolécules Biologiques et de Bioinformatique, Universite Libre de Bruxelles, CP 263, Campus Plaine, Bd, du Triomphe, B 1050 Bruxelles, Belgium
    BMC Bioinformatics 7:488. 2006
    ..In this paper we present a comparative assessment of four algorithms: Markov Clustering (MCL), Restricted Neighborhood Search Clustering (RNSC), Super Paramagnetic Clustering (SPC), and Molecular Complex Detection (MCODE)...
  2. ncbi NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
    Sylvain Brohée
    Laboratoire de Bioinformatique des Génomes et Réseaux BiGRE, Universite Libre de Bruxelles ULB, Boulevard du Triomphe, CP263, B 1050 Bruxelles, Belgium
    Nucleic Acids Res 36:W444-51. 2008
    ..NeAT can also be used as web services (SOAP/WSDL interface), in order to design programmatic workflows and integrate them with other available resources...
  3. ncbi Network Analysis Tools: from biological networks to clusters and pathways
    Sylvain Brohée
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Campus Plaine, CP 263, Boulevard du Triomphe, Bruxelles, Belgium
    Nat Protoc 3:1616-29. 2008
    ..e., clusters or paths) or tables displaying statistics. Typical networks comprising several thousands of nodes and arcs can be analyzed within a few minutes. The complete protocol can be read and executed in approximately 1 h...
  4. ncbi Unraveling networks of co-regulated genes on the sole basis of genome sequences
    Sylvain Brohée
    Lab Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles ULB, CP 263, Campus Plaine, Bld du Triomphe, 1050 Brussels, Belgium
    Nucleic Acids Res 39:6340-58. 2011
    ..Long-term benefits can easily be perceived when considering the exponential increase of new genome sequences...
  5. ncbi RSAT: regulatory sequence analysis tools
    Morgane Thomas-Chollier
    Laboratoire de Bioinformatique des Génomes et des Réseaux BiGRe, Universite Libre de Bruxelles, Campus Plaine, CP 263 Bld du Triomphe, B 1050 Bruxelles, Belgium
    Nucleic Acids Res 36:W119-27. 2008
    ..Since 1998, the tools have been used by several hundreds of researchers from all over the world. Several predictions made with RSAT were validated experimentally and published...