Zdravko J Lorkovic

Summary

Affiliation: University of Vienna
Country: Austria

Publications

  1. ncbi Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana
    Zdravko J Lorkovic
    Institute of Medical Biochemistry, Vienna University, Dr Bohrgasse 9 3, 1030 Vienna, Austria
    Nucleic Acids Res 30:623-35. 2002
  2. ncbi AtCyp59 is a multidomain cyclophilin from Arabidopsis thaliana that interacts with SR proteins and the C-terminal domain of the RNA polymerase II
    Monika Gullerova
    Max F Perutz Laboratories, University Departments at the Vienna Biocenter, Department of Biochemistry, Medical University of Vienna, Dr Bohrgasse 9 3, A 1030 Vienna, Austria
    RNA 12:631-43. 2006
  3. ncbi Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells
    Zdravko J Lorkovic
    Max F Perutz Laboratories, University Departments at the Vienna Biocenter, Institute of Medical Biochemistry, 1030 Vienna, Austria
    Mol Biol Cell 15:3233-43. 2004
  4. ncbi Interactions of Arabidopsis RS domain containing cyclophilins with SR proteins and U1 and U11 small nuclear ribonucleoprotein-specific proteins suggest their involvement in pre-mRNA Splicing
    Zdravko J Lorkovic
    Max F Perutz Laboratories, University Departments at the Vienna Biocenter, Department of Biochemistry, Medical University of Vienna, Dr Bohrgasse 9 3, A 1030 Vienna, Austria
    J Biol Chem 279:33890-8. 2004
  5. ncbi Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factors
    Sergiy Lopato
    Institut für Medizinische Biochemie, Universitat Wien, Vienna Biocenter, Dr Bohrgasse 9 3, Wien A 1030, Austria
    J Biol Chem 277:39989-98. 2002
  6. ncbi Role of plant RNA-binding proteins in development, stress response and genome organization
    Zdravko J Lorkovic
    Max F Perutz Laboratories, Department of Medical Biochemistry, Medical University of Vienna, Dr Bohrgasse 9 3, A 1030 Vienna, Austria
    Trends Plant Sci 14:229-36. 2009
  7. ncbi Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis
    Sergio de la Fuente van Bentem
    Department of Plant Molecular Biology, Max F Perutz Laboratories, University of Vienna, Dr Bohr Gasse 9, 1030 Vienna, Austria
    J Proteome Res 7:2458-70. 2008
  8. ncbi Evolutionary conservation of minor U12-type spliceosome between plants and humans
    Zdravko J Lorkovic
    Max F Perutz Laboratories, University Departments at the Vienna Biocenter, Department of Biochemistry, Medical University of Vienna, A 1030 Vienna, Austria
    RNA 11:1095-107. 2005
  9. ncbi Compartmentalization of the splicing machinery in plant cell nuclei
    Zdravko J Lorkovic
    Max F Perutz Laboratories, University Departments at the Vienna Biocenter, Department of Biochemistry, Medical University of Vienna, Dr Bohrgasse 9 3, A 1030 Vienna, Austria
    Trends Plant Sci 9:565-8. 2004
  10. ncbi RNA-directed DNA methylation and plant development require an IWR1-type transcription factor
    Tatsuo Kanno
    Gregor Mendel Institute of Molecular Plant Biology, Austrian Academy of Sciences, Dr Bohr Gasse 3, 1030 Vienna, Austria
    EMBO Rep 11:65-71. 2010

Collaborators

  • Sergiy Lopato
  • David P Kreil
  • Heribert Hirt
  • Claudia Jonak
  • Blake C Meyers
  • Alessandro Carreri
  • Tatsuo Kanno
  • Sergio de la Fuente van Bentem
  • Andrea Barta
  • Monika Gullerova
  • Etienne Bucher
  • Marc Lind
  • Lucia Daxinger
  • Bruno Huettel
  • Manfred J Schmitt
  • Sai Guna Ranjan Gurazada
  • Stacey A Simon
  • Marjori Matzke
  • Antonius J M Matzke
  • Frank Breinig
  • Andreas Verhounig
  • Elisabeth Roitinger
  • Jos Joore
  • Edina Csaszar
  • Ilse Dohnal
  • David Lecourieux
  • Joshua Buijnink
  • Dorothea Anrather
  • Celine Forzani

Detail Information

Publications10

  1. ncbi Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana
    Zdravko J Lorkovic
    Institute of Medical Biochemistry, Vienna University, Dr Bohrgasse 9 3, 1030 Vienna, Austria
    Nucleic Acids Res 30:623-35. 2002
    ..This survey provides a first systematic analysis of plant RNA-binding proteins, which may serve as a basis for functional characterisation of this important protein group in plants...
  2. ncbi AtCyp59 is a multidomain cyclophilin from Arabidopsis thaliana that interacts with SR proteins and the C-terminal domain of the RNA polymerase II
    Monika Gullerova
    Max F Perutz Laboratories, University Departments at the Vienna Biocenter, Department of Biochemistry, Medical University of Vienna, Dr Bohrgasse 9 3, A 1030 Vienna, Austria
    RNA 12:631-43. 2006
    ..Together our data suggest a possible function of AtCyp59 in activities connecting transcription and pre-mRNA processing. We discuss our data in the context of a dynamic interplay between transcription and pre-mRNA processing...
  3. ncbi Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells
    Zdravko J Lorkovic
    Max F Perutz Laboratories, University Departments at the Vienna Biocenter, Institute of Medical Biochemistry, 1030 Vienna, Austria
    Mol Biol Cell 15:3233-43. 2004
    ....
  4. ncbi Interactions of Arabidopsis RS domain containing cyclophilins with SR proteins and U1 and U11 small nuclear ribonucleoprotein-specific proteins suggest their involvement in pre-mRNA Splicing
    Zdravko J Lorkovic
    Max F Perutz Laboratories, University Departments at the Vienna Biocenter, Department of Biochemistry, Medical University of Vienna, Dr Bohrgasse 9 3, A 1030 Vienna, Austria
    J Biol Chem 279:33890-8. 2004
    ..Alternatively, binding of CypRS64 to proteins important for 5' splice site recognition suggests its involvement in the dynamics of spliceosome assembly...
  5. ncbi Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factors
    Sergiy Lopato
    Institut für Medizinische Biochemie, Universitat Wien, Vienna Biocenter, Dr Bohrgasse 9 3, Wien A 1030, Austria
    J Biol Chem 277:39989-98. 2002
    ..However, the interacting domain is relatively small, allowing binding of additional proteins, a feature that is consistent with the proposed role of atRSZ33 in spliceosome assembly...
  6. ncbi Role of plant RNA-binding proteins in development, stress response and genome organization
    Zdravko J Lorkovic
    Max F Perutz Laboratories, Department of Medical Biochemistry, Medical University of Vienna, Dr Bohrgasse 9 3, A 1030 Vienna, Austria
    Trends Plant Sci 14:229-36. 2009
    ..Clearly, they act by regulating pre-mRNA splicing, polyadenylation, RNA stability and RNA export, as well as by influencing chromatin modification...
  7. ncbi Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis
    Sergio de la Fuente van Bentem
    Department of Plant Molecular Biology, Max F Perutz Laboratories, University of Vienna, Dr Bohr Gasse 9, 1030 Vienna, Austria
    J Proteome Res 7:2458-70. 2008
    ..Together, our data demonstrate that a combination of mass spectrometry with peptide chip phosphorylation profiling has a great potential to unravel phosphoproteome dynamics and to identify PK substrates...
  8. ncbi Evolutionary conservation of minor U12-type spliceosome between plants and humans
    Zdravko J Lorkovic
    Max F Perutz Laboratories, University Departments at the Vienna Biocenter, Department of Biochemistry, Medical University of Vienna, A 1030 Vienna, Austria
    RNA 11:1095-107. 2005
    ..Taken together, our data indicate that recognition and splicing of minor, AT-AC introns in plants is highly similar to that in humans...
  9. ncbi Compartmentalization of the splicing machinery in plant cell nuclei
    Zdravko J Lorkovic
    Max F Perutz Laboratories, University Departments at the Vienna Biocenter, Department of Biochemistry, Medical University of Vienna, Dr Bohrgasse 9 3, A 1030 Vienna, Austria
    Trends Plant Sci 9:565-8. 2004
    ..Recent studies on nuclear organization of splicing factors in plant cells provide insights into the compartmentalization of the plant cell nuclei and conservation of nuclear compartments between plants and metazoans...
  10. ncbi RNA-directed DNA methylation and plant development require an IWR1-type transcription factor
    Tatsuo Kanno
    Gregor Mendel Institute of Molecular Plant Biology, Austrian Academy of Sciences, Dr Bohr Gasse 3, 1030 Vienna, Austria
    EMBO Rep 11:65-71. 2010
    ..These data suggest that DMS4 might be a regulatory factor for several RNA polymerases, thus explaining its diverse roles in the plant...